1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacaattcaaaaccttttccctagaacattcttctcaattcttatgatttttttttgttacgtttctgagtgaaatgtgtaacaaatatttatcataacatattagTGCTACTTCTGTTGGAGCGGTTTCTTATATGGATATTGAAGGCTTTAGATACAAAAGGGATGTTCTCTTCTGCTATGACCTCCAACTTCCTGCTGATTTT
species | Zea mays |
transcript | GRMZM2G031461_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCAAGGAATGTGAGGAGGAAGCTGGAATCACAAGATCCATATCAACAAA TGCTACTTCTGTTGGAGCGGTTTCTTATATGGATATTGAAGGCTTTAGA-AEST: gi|211200352|gb|FL437137.1|FL437137
genomic: ATCAAGGAATGTGAGGAGGAAGCTGGAATCACAAGATCCATATCAACAAAgtacaattca ... aacatattagTGCTACTTCTGTTGGAGCGGTTTCTTATATGGATATTGAAGGCTTTAGATA
EST: ATCAAGGAATGTGAGGAGGAAGCTGGAATCACAAGATCCATATCAACAAA TGCTACTTCTGTTGGAGCGGTTTCTTATATGGATATTGAAGGCTTTAGATAEST: gi|83278368|gb|DV942376.1|DV942376
genomic: ATCAAGGAATGTGAGGAGGAAGCTGGAATCACAAGATCCATATCAACAAAgtacaattca ... aacatattagTGCTACTTCTGTTGGAGCGGTTTCTTATATGGATATTGAAGGCTTTAGATA
EST: GGAAGCTGGAATCACAAGATCCATATCAACAAA TGCTACTTCTGTGGGAGCGGTTTCTTATATGGATATTGAAGGCTTTAGATAEST: gi|78112939|gb|DV531333.1|DV531333
genomic: GGAAGCTGGAATCACAAGATCCATATCAACAAAgtacaattca ... aacatattagTGCTACTTCTGTTGGAGCGGTTTCTTATATGGATATTGAAGGCTTTAGATA
EST: ATCAAGGAATGTGAGGAGGAAGCTGGAATCACAAGATCCATATCAACAAA TGCTACTTCTGTTGGAGCGGTTTCTTATATGGATATTGAAGGCTTTAGATAEST: gi|40335290|gb|CK369360.1|CK369360
genomic: ATCAAGGAATGTGAGGAGGAAGCTGGAATCACAAGATCCATATCAACAAAgtacaattca ... aacatattagTGCTACTTCTGTTGGAGCGGTTTCTTATATGGATATTGAAGGCTTTAGATA
EST: ATCAAGGAATGTGAGGAGGAAGCTGGAATCACAAGATCCATATCAACAAA TGCTACTTCTGTTGGAGCGGTTTCTTATATGGATATTGAAGGCTTTAGATA
genomic: ATCAAGGAATGTGAGGAGGAAGCTGGAATCACAAGATCCATATCAACAAAgtacaattca ... aacatattagTGCTACTTCTGTTGGAGCGGTTTCTTATATGGATATTGAAGGCTTTAGATA
tttttgttacgtttctgagtgaaatgtgtaacaaatatttatcataacatattagTGCTACTTCTGTTGGAGCGGTTTCTTATATGGATATTGAAGGCTTTAGATACAAAAGGGATGTTCTCTTCTGCTATGACCTCCAACTTCCTGCTGATTTT
tcataac putative branch site (score: 39)
tgtaacaaatatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaattcaaaaccttttccctagaacattcttctcaattcttatgatttttttttgttacgtttctgagtgaaatgtgtaacaaatatttatcataacatattagTGCTACTTCTGTTGGAGCGGTTTCTTATATGGATATTGAAGGCTTTAGATACAAAAGGGATGTTCTCTTCTGCTATGACCTCCAACTTCCTGCTGATTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT