1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...taaaaaaaagcctattccattagtaaaattccaattcctcaaaatgaaaggaaacaaacgggaccttagtgaaatttgaccttgagcatttatgttgcagCTGTTGGACAGAGTGTTCAACATTCTTCGTGAGAACAACCCAGATCTTGCTGGTGATAGGCGGAGAACCGTTATGAGGCCACCTCAAGTTCTTAGGGAGG
species | Zea mays |
transcript | GRMZM2G030646_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGACCGGGATTATAAATACGAGGAG CTGTTGGACAGAGTGTTCAACATTCTTCGTGAGAACAACCCAGATCTTGCTEST: gi|31558627|gb|CD527839.1|CD527839
genomic: CTGACCGGGATTATAAATACGAGGAGgtgattaaat ... tatgttgcagCTGTTGGACAGAGTGTTCAACATTCTTCGTGAGAACAACCCAGATCTTGCT
EST: GGATTATAAATACGAGGAG CTGTTGGACAGAGTGTTCAACATTCTTCGTGAGAACAACCCAGATCTTGCTEST: gi|60359724|gb|DN226697.1|DN226697
genomic: GGATTATAAATACGAGGAGgtgattaaat ... tatgttgcagCTGTTGGACAGAGTGTTCAACATTCTTCGTGAGAACAACCCAGATCTTGCT
EST: GCCCTACATATCCTTGGGAAGGAACTGACCGGGATTATAAATACGAGGAG CTGTTGGACAGAGTGTTCAACATTCTTCGTGAGAACAACCCAGATCTTGCT
genomic: GCCCTACATATCCTTGGGAAGGAACTGACCGGGATTATAAATACGAGGAGgtgattaaat ... tatgttgcagCTGTTGGACAGAGTGTTCAACATTCTTCGTGAGAACAACCCAGATCTTGCT
gaaaggaaacaaacgggaccttagtgaaatttgaccttgagcatttatgttgcagCTGTTGGACAGAGTGTTCAACATTCTTCGTGAGAACAACCCAGATCTTGCTGGTGATAGGCGGAGAACCGTTATGAGGCCACCTCAAGTTCTTAGGGAGG
atttgac putative branch site (score: 4)
atttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaaaaaagcctattccattagtaaaattccaattcctcaaaatgaaaggaaacaaacgggaccttagtgaaatttgaccttgagcatttatgttgcagCTGTTGGACAGAGTGTTCAACATTCTTCGTGAGAACAACCCAGATCTTGCTGGTGATAGGCGGAGAACCGTTATGAGGCCACCTCAAGTTCTTAGGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA