1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgttatatctcctgcatgcattccgcgcttacacacgtttgctccaagttaagttaagttgatgaatattgcgtccatgcatatgcatggtcgagcagagGCGGCATGGTTCGACATGGAGCACGCGAGGTGGCAGGAGGAGCACGGCAAGGTGATGCGCCACCTGCGGGCGGCGCTGGAGGCGGAGTACGCCGCGACGG
species | Zea mays |
transcript | GRMZM2G029979_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
aagttaagttaagttgatgaatattgcgtccatgcatatgcatggtcgagcagagGCGGCATGGTTCGACATGGAGCACGCGAGGTGGCAGGAGGAGCACGGCAAGGTGATGCGCCACCTGCGGGCGGCGCTGGAGGCGGAGTACGCCGCGACGG
agttgat putative branch site (score: 33)
atgaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttatatctcctgcatgcattccgcgcttacacacgtttgctccaagttaagttaagttgatgaatattgcgtccatgcatatgcatggtcgagcagagGCGGCATGGTTCGACATGGAGCACGCGAGGTGGCAGGAGGAGCACGGCAAGGTGATGCGCCACCTGCGGGCGGCGCTGGAGGCGGAGTACGCCGCGACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - ctcctgc
- - - - - - - - tgcattc
- - - - - - - - - - - - - - -tacacac
- - - - - - - - - - - - - - - - - - - -tgctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgg