1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgacttctgcctcgagtctgtgctgttgtgcgtgtgttttctcagtaatggaagctgcaatgcaacgctaatgttgtgtgtgcctgtgctctgcctgcagCAACTTCCTTCCCGCGCTCCTGTTGCCAAAGTCAAAGTTTGAGAGGTGTCGCCGTCCTAGTAAAAAAAAAAGAGGCGACGCTGGAAATCGATCTCTGCTT
species | Zea mays |
transcript | GRMZM2G029824_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAGTGACAGGAGCCTTTGGGTTCGTCACCTCGCTTATCTCCTGCTATCAG CAACTTCCTTCCCGCGCTCCTGTTGCCAAAGTCAAAGTTTGAGAGGTGTCG
genomic: GAGTGACAGGAGCCTTTGGGTTCGTCACCTCGCTTATCTCCTGCTATCAGgtatgacttc ... ctgcctgcagCAACTTCCTTCCCGCGCTCCTGTTGCCAAAGTCAAAGTTTGAGAGGTGTCG
taatggaagctgcaatgcaacgctaatgttgtgtgtgcctgtgctctgcctgcagCAACTTCCTTCCCGCGCTCCTGTTGCCAAAGTCAAAGTTTGAGAGGTGTCGCCGTCCTAGTAAAAAAAAAAGAGGCGACGCTGGAAATCGATCTCTGCTT
cgctaat putative branch site (score: 3)
ctctgcct putative PPT
taatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgacttctgcctcgagtctgtgctgttgtgcgtgtgttttctcagtaatggaagctgcaatgcaacgctaatgttgtgtgtgcctgtgctctgcctgcagCAACTTCCTTCCCGCGCTCCTGTTGCCAAAGTCAAAGTTTGAGAGGTGTCGCCGTCCTAGTAAAAAAAAAAGAGGCGACGCTGGAAATCGATCTCTGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA