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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgatagaacctaacatctctctctaacatcatgggagtatgtaagtgatagaagctaacatctctctctctctctcacgactcagtcacacgtgtgcaacaaagaattatttaaattcaccatggatttacatttttgacagATGATGTGGATACACGTGCTATAACACGAAGATTAAGAGAAGATGGTAGTCTTATTGGTGTCTTGAGTACTGATCAGTCTCTGACAGACAATGAGTTGTT

Basic information

species Zea mays
transcript GRMZM2G029573_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029573_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g47850.3 (Oryza sativa), 3'ss of exon 6
gtaagtgatagaacctaacatctctctctaacatcatgggagtatgtaagtgatagaagctaacatctctctctctctctcacgactcagtcacacgtgtgcaacaaagaattatttaaattcaccatggatttacatttttgacagATGATGTGGATACACGTGCTATAACACGAAGATTAAGAGAAGATGGTAGTCTTATTGGTGTCTTGAGTACTGATCAGTCTCTGACAGACAATGAGTTGTT
                                             ||||||  |   | || | |  |  |||||| | || ||||  |  || ||    |||||||  ||           ||||||  |||| | || |   ||||||||||||| ||||| || |||||||| |||||| |||||||||||||||| ||||||||||| ||||||||||| |||| ||| ||  ||||||||||
---------------------------------------------gtaagtattgtcacctgatacattgctctctatgtc-cgac--aaaca-acaaaagcaacaataaa-----------caccatcaatttgctttatatgcagATGATGTGGACACACGCGCCATAACACGGAGATTACGAGAAGATGGTAGTCTAATTGGTGTCTTAAGTACTGATCAATCTCGGACCGATGATGAGTTGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211289805|gb|FL254555.1|FL254555
EST:     CAAAGAAACACTTGAGAAGTATCTGATTAAGAGGAACATCATGGGAATAT                         ATGATGTGAATACACGTGCTATAACACGAAGATTAAGAGAAGATGGTAGTC
genomic: CAAAGAAACACTTGAGAAGTATCTGATTAAGAGGAACATCATGGGAATATgtaagtgata ... tttttgacagATGATGTGGATACACGTGCTATAACACGAAGATTAAGAGAAGATGGTAGTC
EST: gi|31355937|gb|CD440294.1|CD440294
EST:     CAAAGAAACACTTGAGAAGTATCTGATTAAGAGGAACATCATGGGAATAT                         ATGATGTGGATACACGTGCTATAACACGAAGATTAAGAGAAGATGGTAGTC
genomic: CAAAGAAACACTTGAGAAGTATCTGATTAAGAGGAACATCATGGGAATATgtaagtgata ... tttttgacagATGATGTGGATACACGTGCTATAACACGAAGATTAAGAGAAGATGGTAGTC
EST: gi|31361816|gb|CD446173.1|CD446173
EST:     CAAAGAAACACTTGAGAAGTATCTGATTAAGAGGAACATCATGGGAATAT                         ATGATGTGGATACACGTGCTATAACCCGAAGATTAAGAGAAGATGGTAGTC
genomic: CAAAGAAACACTTGAGAAGTATCTGATTAAGAGGAACATCATGGGAATATgtaagtgata ... tttttgacagATGATGTGGATACACGTGCTATAACACGAAGATTAAGAGAAGATGGTAGTC
EST: gi|89248122|gb|DY619908.1|DY619908
EST:     CAAAGAAACACTTGAGAAGTATCTGATTAAGAGGAACATCATGGGAATAT                         ATGATGTGGATACACGTGCTATAACACGAAGATTAAGAGAAGATGGTAGTC
genomic: CAAAGAAACACTTGAGAAGTATCTGATTAAGAGGAACATCATGGGAATATgtaagtgata ... tttttgacagATGATGTGGATACACGTGCTATAACACGAAGATTAAGAGAAGATGGTAGTC
EST: gi|148969434|gb|EE020234.2|EE020234
EST:     CAAAGAAACACTTGAGAAGTATCTGATTAAGAGGAACATCATGGGAATAT                         ATGATGTGGATACACGTGCTATAACACGAAGATTAAGAGAAGATGGTAGTC
genomic: CAAAGAAACACTTGAGAAGTATCTGATTAAGAGGAACATCATGGGAATATgtaagtgata ... tttttgacagATGATGTGGATACACGTGCTATAACACGAAGATTAAGAGAAGATGGTAGTC
EST: gi|211518587|gb|FL052555.1|FL052555
EST:     CAAAGAAACACTTGAGAAGTATCTGATTAAGAGGAACATCATGGGAATAT                         ATGATGTGGATACACGTGCTATAACACGAAGATTAAGAGAAGATGGTAGTC
genomic: CAAAGAAACACTTGAGAAGTATCTGATTAAGAGGAACATCATGGGAATATgtaagtgata ... tttttgacagATGATGTGGATACACGTGCTATAACACGAAGATTAAGAGAAGATGGTAGTC
EST: gi|71764310|gb|DR962247.1|DR962247
EST:     CAAAGAAACACTTGAGAAGTATCTGATTAAGAGGAACATCATGGGAATAT                         ATGATGTGGATACACGTGCTATAACACGAAGATTAAGAGAAGATGGTAGTC
genomic: CAAAGAAACACTTGAGAAGTATCTGATTAAGAGGAACATCATGGGAATATgtaagtgata ... tttttgacagATGATGTGGATACACGTGCTATAACACGAAGATTAAGAGAAGATGGTAGTC
EST: gi|211287670|gb|FL254548.1|FL254548
EST:     CAAAGAAACACTTGAGAAGTATCTGATTAAGAGGAACATCATGGGAATAT                         ATGATGTGGATACACGTGCTATAACACGAAGATTAAGAGAAGATGGTAGTC
genomic: CAAAGAAACACTTGAGAAGTATCTGATTAAGAGGAACATCATGGGAATATgtaagtgata ... tttttgacagATGATGTGGATACACGTGCTATAACACGAAGATTAAGAGAAGATGGTAGTC
EST: gi|211287673|gb|FL254551.1|FL254551
EST:     CAAAGAAACACTTGAGAAGTATCTGATTAAGAGGAACATCATGGGAATAT                         ATGATGTGAATACACGTGCTATAACACGAAGATTAAGAGAAGATGGTAGTC
genomic: CAAAGAAACACTTGAGAAGTATCTGATTAAGAGGAACATCATGGGAATATgtaagtgata ... tttttgacagATGATGTGGATACACGTGCTATAACACGAAGATTAAGAGAAGATGGTAGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacgtgtgcaacaaagaattatttaaattcaccatggatttacatttttgacagATGATGTGGATACACGTGCTATAACACGAAGATTAAGAGAAGATGGTAGTCTTATTGGTGTCTTGAGTACTGATCAGTCTCTGACAGACAATGAGTTGTT
                                           cattttt  CT-rich tract
          aacaaagaattattta  TA-rich tract