Sequence
atgc intronic sequence ATGC exonic sequence...agcaccatttcaaaccggtttatatatgaatccgcacggttttctgaacattttcagggtgcatgatgtttgagatagctgtgcttatcttggaacgcagGGGAGATGATCGTTGGCCCGACCAAGGTGCTGTTCATGGACGAGATATCAACTGGGCTGGACAGCTCCACGACGTTCCAGATCGTCAAATGTCTCCAGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G029506_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os06g36090.1 (Oryza sativa), 3'ss of exon 2
----agcacca-tttcaaaccggtttatatatgaatccgcacggttttctgaacattttcagggtgcatgatgtttgagatagctgtgcttatcttggaacgcagGGGAGATGATCGTTGGCCCGACCAAGGTGCTGTTCATGGACGAGATATCAACTGGGCTGGACAGCTCCACGACGTTCCAGATCGTCAAATGTCTCCAGCA
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gatcagtatgaactataaagtattgaaggtattgacccttttt-ttccccgaaaattgtaaggatgc-taacaat--gaacaaatttgctcat-ttggaatgcagGTGAGATGATTGTCGGTCCAACAAAGGTTCTATTCATGGATGAGATATCAACTGGATTGGACAGCTCCACCACATTCCAGATTGTCAAATGCCTTCAGCA
upper sequence: GRMZM2G029506_T01 (Zea mays), 3'ss of exon 6
lower sequence: Vv09s0002g03630.t01 (Vitis vinifera), 3'ss of exon 8
-------agcaccatttcaaaccggtttatatatgaat---ccgcacggttttctgaacattttcagggtgcatgatgtttgagatagctgtgcttatcttggaacgcagGGGAGATGATCGTTGGCCCGACCAAGGTGCTGTTCATGGACGAGATATCAACTGGGCTGGACAGCTCCACGACGTTCCAGATCGTCAAATGTCTCCAGCA
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gttaattctctcttcttcttcttttttcttttttgaatatttcttataaaaaattaatgataattactaaaaataataataaaattgggt-tcctaatttttgaatgtagGGGAGATGATAGTGGGACCGGCGAAGTTTCTGTTGATGGACGAGATATCGACGGGCCTGGACAGCTCCACGACTCTGCAGATAGTGAGATGCATGCAGCA
upper sequence: GRMZM2G029506_T01 (Zea mays), 3'ss of exon 6
lower sequence: Vv09s0002g03550.t01 (Vitis vinifera), 3'ss of exon 6
----agcaccatttcaaaccggtttatatatgaatccgcacggttttctgaacattttcagggtgcatgatgtttgagatagctgtgcttatcttgg-aacgcagGGGAGATGATCGTTGGCCCGACCAAGGTGCTGTTCATGGACGAGATATCAACTGGGCTGGACAGCTCCACGACGTTCCAGATCGTCAAATGTCTCCAGCA
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tagtctgatgattttgtatggatcaaatgatga--tagcattgcatgatggacaaggttgacctataatgggcctgactt---tgggctgatttggataatgcagGAGAGATGATTGTTGGGCCTACAAAAACGCTGTTTATGGACGAGATATCAACTGGGCTGGACAGCTCTACTACGTTTCAGATTGTGAAGTGCTTGCAGCA
upper sequence: GRMZM2G029506_T01 (Zea mays), 3'ss of exon 6
lower sequence: Vv09s0002g03580.t01 (Vitis vinifera), 3'ss of exon 7
---agcaccatttcaaaccggtttatatatgaatccgcacggttttctgaacattttcagggtgcatg------atgtt--tgagatagctgtgcttatcttggaacgcagGGGAGATGATCGTTGGCCCGACCAAGGTGCTGTTCATGGACGAGATATCAACTGGGCTGGACAGCTCCACGACGTTCCAGATCGTCAAATGTCTCCAGCA
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gttaattctcttttctttttcttttttcttttttttgaatatttcttataaaaatttaatgataattactaaaaataataataaaattgggttcctaatttttgaacgtagGGGAGATGATAGTGGGACCGGCGAAGTTTCTGTTGATGGACGAGATATCGACGGGCCTGGACAGCTCCACGACTCTGCAAATAGTGAGATGCATGCAGCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaacattttcagggtgcatgatgtttgagatagctgtgcttatcttggaacgcagGGGAGATGATCGTTGGCCCGACCAAGGTGCTGTTCATGGACGAGATATCAACTGGGCTGGACAGCTCCACGACGTTCCAGATCGTCAAATGTCTCCAGCA
cttatctt CT-rich tract
ttatctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agcaccatttcaaaccggtttatatatgaatccgcacggttttctgaacattttcagggtgcatgatgtttgagatagctgtgcttatcttggaacgcagGGGAGATGATCGTTGGCCCGACCAAGGTGCTGTTCATGGACGAGATATCAACTGGGCTGGACAGCTCCACGACGTTCCAGATCGTCAAATGTCTCCAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
-gcaccat
- - - - - - - - - - - - - tgaatcc
- - - - - - - - - - - - - - - - - - - -ttttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgctt