1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtccgtacatatatgaagtgctacatttttttctctttactgaaataatgctatattgtgctagcttttcaaacatgctttcattcatgattcatctttaaacctaaacctttagaactctaatttcccaaacttgttaatggccctgttggatttttgccttgagaaaactgcagtgcaaagccttttgttcactgcagGTGACATTCCAATGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAAGAAGGCTACCGGCTACGGAATCACAGAAATTCCAAGATGACTTTTTAAT
species | Zea mays |
transcript | GRMZM2G028089_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTSCCATSCAAAAAG GTGACATTCCAATGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAAEST: gi|5343228|gb|AI795413.1|AI795413
genomic: CAATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTGCCATGCAAAAAGgtccgtacat ... ttcactgcagGTGACATTCCAATGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAA
EST: CAATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTGCCATGCAAAAAG GTGACATTCCAATGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAAEST: gi|74245516|gb|DT653430.1|DT653430
genomic: CAATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTGCCATGCAAAAAGgtccgtacat ... ttcactgcagGTGACATTCCAATGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAA
EST: CAATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTGCCATGCAAAAAG GTGACATTCCNATGGACAATTCGCTGCTTAEST: gi|37383993|gb|CF629039.1|CF629039
genomic: CAATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTGCCATGCAAAAAGgtccgtacat ... ttcactgcagGTGACATTCCAATGGACAATTCGCTGCTTA
EST: CAATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTGCCATGCAAAAAG GTGACATTCCAATGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAAEST: gi|37378561|gb|CF625975.1|CF625975
genomic: CAATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTGCCATGCAAAAAGgtccgtacat ... ttcactgcagGTGACATTCCAATGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAA
EST: CAATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTGCCATGCAAAAAG GTGACATTCCAATGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAAEST: gi|71428766|gb|DR809816.1|DR809816
genomic: CAATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTGCCATGCAAAAAGgtccgtacat ... ttcactgcagGTGACATTCCAATGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAA
EST: CAATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTGCCATGCAAAAAG GTGACATTCCAATGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAAEST: gi|78079913|gb|DV508325.1|DV508325
genomic: CAATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTGCCATGCAAAAAGgtccgtacat ... ttcactgcagGTGACATTCCAATGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAA
EST: CAATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTGCCATGCAAAAAG GTGACATTCCAATGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAAEST: gi|5847033|gb|AW000112.1|AW000112
genomic: CAATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTGCCATGCAAAAAGgtccgtacat ... ttcactgcagGTGACATTCCAATGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAA
EST: CAATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTGCCATGCAAAAAG GTGACATTCCAATGGCCAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAAEST: gi|78104235|gb|DV522653.1|DV522653
genomic: CAATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTGCCATGCAAAAAGgtccgtacat ... ttcactgcagGTGACATTCCAATGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAA
EST: CAATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTGCCATGCAAAAAG GTGACATTCCAATGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAAEST: gi|5650012|gb|AI920372.1|AI920372
genomic: CAATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTGCCATGCAAAAAGgtccgtacat ... ttcactgcagGTGACATTCCAATGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAA
EST: CAATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTGCCATGCAAAAAG GTGACATTCCAATGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAAEST: gi|76925807|gb|DV170603.1|DV170603
genomic: CAATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTGCCATGCAAAAAGgtccgtacat ... ttcactgcagGTGACATTCCAATGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAA
EST: AATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTTGC-ATGCAAAAAA GTGACATTCCCATGGACAATTCGCTGCTTEST: gi|74245515|gb|DT653429.1|DT653429
genomic: AATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTT-GCCATGCAAAAAGgtccgtacat ... ttcactgcagGTGACATTCCAATGGACAATTCGCTGCTT
EST: CAATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTGCCATGCAAAAAG GTGACATTCCAATGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAA
genomic: CAATAGCAGGGTCCGTGTTATCCATCAGTATCTTGTTGCCATGCAAAAAGgtccgtacat ... ttcactgcagGTGACATTCCAATGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAA
ctgttggatttttgccttgagaaaactgcagtgcaaagccttttgttcactgcagGTGACATTCCAATGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAAGAAGGCTACCGGCTACGGAATCACAGAAATTCCAAGATGACTTTTTAAT
ccttttgttc CT-rich tract
attttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccgtacatatatgaagtgctacatttttttctctttactgaaataatgctatattgtgctagcttttcaaacatgctttcattcatgattcatctttaaacctaaacctttagaactctaatttcccaaacttgttaatggccctgttggatttttgccttgagaaaactgcagtgcaaagccttttgttcactgcagGTGACATTCCAATGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTTGTAAGAAGGCTACCGGCTACGGAATCACAGAAATTCCAAGATGACTTTTTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG