1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgcacctctgatcagatgtggcaagggaattcacgcttgttgtcttactctcttaactgactctgttcatatatatggcatttgcagCTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATGTCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCA
species | Zea mays |
transcript | GRMZM2G027851_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAG CTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATGEST: gi|78093452|gb|DV521826.1|DV521826
genomic: AGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAGgtgcacctct ... gcatttgcagCTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATG
EST: AGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAG CTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATGEST: gi|71761590|gb|DR959527.1|DR959527
genomic: AGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAGgtgcacctct ... gcatttgcagCTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATG
EST: AGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAG CTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATGEST: gi|71446906|gb|DR827956.1|DR827956
genomic: AGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAGgtgcacctct ... gcatttgcagCTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATG
EST: AGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAG CTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATGEST: gi|71758416|gb|DR956353.1|DR956353
genomic: AGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAGgtgcacctct ... gcatttgcagCTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATG
EST: AGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAG CTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATGEST: gi|78074782|gb|DV503216.1|DV503216
genomic: AGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAGgtgcacctct ... gcatttgcagCTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATG
EST: AGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAG CTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATGEST: gi|211100374|gb|FL186479.1|FL186479
genomic: AGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAGgtgcacctct ... gcatttgcagCTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATG
EST: AGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAG CTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATGEST: gi|76013009|gb|DT940179.1|DT940179
genomic: AGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAGgtgcacctct ... gcatttgcagCTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATG
EST: AGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAG CTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATGEST: gi|89755589|gb|DY685958.1|DY685958
genomic: AGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAGgtgcacctct ... gcatttgcagCTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATG
EST: AGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAG CTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATGEST: gi|74239374|gb|DT647288.1|DT647288
genomic: AGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAGgtgcacctct ... gcatttgcagCTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATG
EST: AGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAG CTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATGEST: gi|71427238|gb|DR808288.1|DR808288
genomic: AGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAGgtgcacctct ... gcatttgcagCTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATG
EST: TGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAG CTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATGEST: gi|78115472|gb|DV533860.1|DV533860
genomic: TGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAGgtgcacctct ... gcatttgcagCTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATG
EST: ATGGCTTACCTCTCCTACCATGCTGGCCGAG CTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATGEST: gi|76936699|gb|DV174843.1|DV174843
genomic: ATGGCTTACCTCTCCTA-CATGCTGGCCGAGgtgcacctct ... gcatttgcagCTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATG
EST: AGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAG CTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATGEST: gi|78080129|gb|DV508541.1|DV508541
genomic: AGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAGgtgcacctct ... gcatttgcagCTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATG
EST: CATGGCTTACCTCTCCTACATGCTGGCCGAG CTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATG
genomic: CATGGCTTACCTCTCCTACATGCTGGCCGAGgtgcacctct ... gcatttgcagCTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATG
acgcttgttgtcttactctcttaactgactctgttcatatatatggcatttgcagCTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATGTCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCA
aactgac putative branch site (score: 15)
ttcatatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcacctctgatcagatgtggcaagggaattcacgcttgttgtcttactctcttaactgactctgttcatatatatggcatttgcagCTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATGTCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA