Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaataaaccagtgcactctggttccaatcttcatgttctgtaggacctctgaaaccagcatcattctccattctgcagCTGTCTTTTCAAGAATGGACACAGCAGATGAGGGATATGCTGGATGCAAGGAAACGTGGCGACTCTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCG

Basic information

species Zea mays
transcript GRMZM2G026767_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G026767_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os10g39670.1 (Oryza sativa), 3'ss of exon 7
gtaaa-ataaaccagtgcactctggttccaatcttcatgttctg--tagga--------cctctgaa-----------------------accagcatcattctccattctgcagCTGTCTTTTCAAGAATGGACACAGCAGATGAGGGATATGCTGGATGCAAGGAAACGTGGCGACTCTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCG
||||| | ||   || ||||| ||| |||| ||||      |||  | |||        |||||  |                         |   ||  ||||||  ||||||||| ||||| ||||||||||| || |||||||| |||||| ||||||| ||||||||||| || | ||| ||   ||||||| |||| |||  ||| || |
gtaaagacaatatagagcactgtggctccactcttttctagctggttgggatactggtccctctcgactgttttcttcctatggggacgtgtctaaattgttctcctctctgcagCTATCTTTCCAAGAATGGACTCAACAGATGAGAGATATGTTGGATGCTAGGAAACGTGGTGATTTTGCATTTCGAGACAAAAATTTCAAGCAAGCCATAG

upper sequence: GRMZM2G026767_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA02G48030.1 (Glycine max), 3'ss of exon 5
gtaaaataaaccagtgcactctggttccaatcttcatgttctgtaggacc-tctgaaaccagcatc-attctccattc-tgcagCTGTCTTTTCAAGAATGGACACAGCAGATGAGGGATATGCTGGATGCAAGGAAACGTGGCGACTCTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCG
    ||   |   ||||| |  | ||  | |    || ||  || |||   | ||  |  ||  |  | | |  |||  | ||| |||| || ||||| ||||| || |||||||| ||||||||||| |||||||| ||||| |||| ||| |||   ||||| || |||||| |||| || |
--gtaactgatgggtgcattgggtttaaatttactatttttggttggatgatatgccataaggtttgaatttggattggttcagTTGTCGTTCCAAGAGTGGACTCAACAGATGAGAGATATGCTGGAGGCAAGGAAGCGTGGAGACTATGCATTCCGTGACAAGGACTTTAAGACAGCCATTG

upper sequence: GRMZM2G026767_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA14G00540.1 (Glycine max), 3'ss of exon 5
gtaaaataaaccagtgcactctggttccaatcttcatgttctgtaggacc-tctgaaaccagcatc-attctccattc-tgcagCTGTCTTTTCAAGAATGGACACAGCAGATGAGGGATATGCTGGATGCAAGGAAACGTGGCGACTCTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCG
    ||   |   ||||| |    ||  | |    || ||   | |||   | ||  |  ||  |  | | |  |||  | ||| ||||||||||||| ||||| || |||||||| ||||||||||| |||||||| || || |||  ||| |||   ||||| || |||| | |||| || |
--gtaactgatgggtgcattggttttaaatttactatttttaattggatgatgtgccataaggtttgaatttggattggttcagTTGTCTTTTCAAGAGTGGACTCAACAGATGAGAGATATGCTGGAAGCAAGGAAGCGCGGAGACCATGCATTCCGTGACAAGGACTTTAGGACAGCCATTG

upper sequence: GRMZM2G026767_T01 (Zea mays), 3'ss of exon 6
lower sequence: Vv18s0001g00180.t01 (Vitis vinifera), 3'ss of exon 7
gtaaaataaaccagtgcactctggtt--ccaatcttcatgttctgtaggacctctgaaaccagcatcat-tctccattctgcagCTGTCTTTTCAAGAATGGACACAGCAGATGAGGGATATGCTGGATGCAAGGAAACGTGGCGACTCTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCG
|||    |   |     |    ||||  |  |||  ||| ||   |   |      |  |    |   | | |  ||  ||||| | ||||| |||||||||||||| || ||||| |||||||| || ||||| || ||||| ||||  || |||   ||||||||||||||  |||| || |
gtacttgatttctacagatgtaggtttgcagatccccatctttaattctatgctaaattctttaaatgtatgtggataatgcagTTATCTTTCCAAGAATGGACACAACAAATGAGAGATATGCTTGAGGCAAGAAAGCGTGGGGACTTAGCATTCCGTGACAAAGATTTTAAAACAGCCATAG

upper sequence: GRMZM2G026767_T01 (Zea mays), 3'ss of exon 6
lower sequence: Vv03s0038g03270.t01 (Vitis vinifera), 3'ss of exon 7
---gtaaaataaaccagtgcactctggttcca--atcttcatgttctgtaggacctctgaaaccagcatcattct----ccattctg---cagCTGTCTTTTCAAGAATGGACACAGCAGATGAGGGATATGCTGGATGCAAGGAAACGTGGCGACTCTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCG
    |  | |     |      | |  ||     ||||  ||  ||| ||   ||  ||      |  | ||  |       |  ||   ||| |||| || ||||||||||| || |||||||| |||||||| || |||||||| ||||| |||| ||| |||   ||||| ||||||||  | || || |
gtaattgagttgttgatgaaggtttttttttggcatctctatactct-tacatccaatggtgagtggtttatcttggtgttgtattggttcagTTGTCCTTCCAAGAATGGACCCAACAGATGAGAGATATGCTAGAAGCAAGGAAGCGTGGGGACTTTGCATTCCGTGACAAGGATTTTAAAACTGCCATTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32944385|gb|CF049204.1|CF049204
EST:     ATCAGATCCTATTCACAACGCATTACCGAGATGATGAAGGGAGCAATGAG                         CTGTCTTTTCAAGAATGGACACAGCAGATGAGGGATATGCTGGATGCAAGG
genomic: ATCAGATCCTATTCACAACGCATTACCGAGATGATGAAGGGAGCAATGAGgtaaaataaa ... cattctgcagCTGTCTTTTCAAGAATGGACACAGCAGATGAGGGATATGCTGGATGCAAGG
EST: gi|32795968|gb|CD948204.1|CD948204
EST:     GATCCTATTCACAACGCATTACCGAGATGATGAAGGGAGCAATGAG                         CTGTCTTTTCAAGAATGGACACAGCAGATGAGGGATATGCTGGATGCAAGG
genomic: GATCCTATTCACAACGCATTACCGAGATGATGAAGGGAGCAATGAGgtaaaataaa ... cattctgcagCTGTCTTTTCAAGAATGGACACAGCAGATGAGGGATATGCTGGATGCAAGG
EST: gi|32846920|gb|CD986601.1|CD986601
EST:     ATCAGATCCTATTCACAACGCATTACCGAGATGATGAAGGGAGCAATGAG                         CTGTCTTTTCAAGAATGGACACAGCAGATGAGGGATATGCTGGATGCAAGG
genomic: ATCAGATCCTATTCACAACGCATTACCGAGATGATGAAGGGAGCAATGAGgtaaaataaa ... cattctgcagCTGTCTTTTCAAGAATGGACACAGCAGATGAGGGATATGCTGGATGCAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaatcttcatgttctgtaggacctctgaaaccagcatcattctccattctgcagCTGTCTTTTCAAGAATGGACACAGCAGATGAGGGATATGCTGGATGCAAGGAAACGTGGCGACTCTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCG
                                     tcattctccattct  CT-rich tract