1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ccatttattgtggcaagtgtgctttctaaaatttgcacgagcaacaattccttgtcagcttcgatcgttaataatcagctacaacatggagacggtgcagGTACATCTGGTCGAGTGGCTCAAAATGATGGTTGGCACGAGAAGAGCTGAGGAGGTGGTGGATCCTGACATGGAGTTGAAACCTGCCACTCGGGCTCTGA
species | Zea mays |
transcript | GRMZM2G026301_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AATCAGTTACTGGGAGGGACCCAGTTGACTATGGTCGGCCTGCTAATGAG GTACATCTGGTTGAGTGGCTCAAAATGATGGTTGGCACGAGAAGAGCTGAGEST: gi|37421911|gb|CF648659.1|CF648659
genomic: AATCAGTTACTGGGAGGGACCCAGTTGACTATGGTCGGCCAGCTAATGAGgtgagcgtct ... gacggtgcagGTACATCTGGTCGAGTGGCTCAAAATGATGGTTGGCACGAGAAGAGCTGAG
EST: AATCAGTTACTGGGAGGGACCCAGTTGACTATGGTCGGCCAGCTAATGAG GTACATCTGGTCGAGTGGCTCAAAATGATGGTTGGCACGAGAAGAGCTGAGEST: gi|20803185|gb|BQ294235.1|BQ294235
genomic: AATCAGTTACTGGGAGGGACCCAGTTGACTATGGTCGGCCAGCTAATGAGgtgagcgtct ... gacggtgcagGTACATCTGGTCGAGTGGCTCAAAATGATGGTTGGCACGAGAAGAGCTGAG
EST: AATCAGTTACTGGGAGGGACCCAGTTGACTATGGTCGGCCTGCTAATGAG GTACATCTGGTTGAGTGGCTCAAAATGATGGTTGGCACGAGAAGAGCTGAG
genomic: AATCAGTTACTGGGAGGGACCCAGTTGACTATGGTCGGCCAGCTAATGAGgtgagcgtct ... gacggtgcagGTACATCTGGTCGAGTGGCTCAAAATGATGGTTGGCACGAGAAGAGCTGAG
aattccttgtcagcttcgatcgttaataatcagctacaacatggagacggtgcagGTACATCTGGTCGAGTGGCTCAAAATGATGGTTGGCACGAGAAGAGCTGAGGAGGTGGTGGATCCTGACATGGAGTTGAAACCTGCCACTCGGGCTCTGA
cgttaat putative branch site (score: 91)
ttaataatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatttattgtggcaagtgtgctttctaaaatttgcacgagcaacaattccttgtcagcttcgatcgttaataatcagctacaacatggagacggtgcagGTACATCTGGTCGAGTGGCTCAAAATGATGGTTGGCACGAGAAGAGCTGAGGAGGTGGTGGATCCTGACATGGAGTTGAAACCTGCCACTCGGGCTCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - gcaagtg
- - - - - - - - - -tgctttc
- - - - - - - - - - - - - - - atttgca
- - - - - - - - - - - - - - - - - - - -agcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgga