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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggtcctttttgaattagtgcatagcttttgcagggacattgggattataaatacatgtccgccttcaaaacttggtcattgtacattggtcttaaagtagttttatattccagATAACCGATAAACATTTGAACCTTCCATCCACCCTGGCTTCGTTCAGCAACTTCTTGTTGGGTGAGATATTTTCTCAG

Basic information

species Zea mays
transcript GRMZM2G025659_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025659_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g69060.1 (Oryza sativa), 3'ss of exon 9
gttaggtcctttt-tgaattagtgcata-gcttttgcagggacattgggattataaatac------atgtccgccttcaaaacttggtcat-----------tgtacattggtcttaaagtagttttatattccagATAACCGATAAACATTTGAACCTTCCATCCACCCTGGCTTCGTTCAGCAACTTCTTGTTGGGTGAGATATTTTCTCAG
|| || |  |||| | | |     |||| | |||  | |  |  || |  |  || ||||      || |   | |  ||| |||  | ||             || | || ||   || |  |||||||||  ||||||| ||||| |||  ||| ||||| |||||||| || |  |||||||| ||||||||||||||||||||||| |||
gtgagttttttttattagtagccacataagttttctctgatatttttgtgtgctacatactacgcaatcttgtcttgtaaagcttcattatatcttgagagtcatagactgatcacgaaatgcttttatattt-agATAACGGATAAGCATGCGAAGCTTCCGTCCACCCTTGCATGTTTCAGCAATTTCTTGTTGGGTGAGATATTTTCCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgccttcaaaacttggtcattgtacattggtcttaaagtagttttatattccagATAACCGATAAACATTTGAACCTTCCATCCACCCTGGCTTCGTTCAGCAACTTCTTGTTGGGTGAGATATTTTCTCAG
                                 ttaaagtagttttata  TA-rich tract