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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcatgtacaacctatgtgcaccaaaggctcatgtgcaccggatatgttttttttttaatttcttgatcttctgtaacatgctattgctggtcccctcagGACAATATGTCATGACTATGACAGCACCATTTGGGATGTTCGCATGGTCAGGAGTTTTTCTTGCAACTGCTGGGTTGGTCATGTTCTATAAATGTAGCAG

Basic information

species Zea mays
transcript GRMZM2G024437_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G024437_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os06g43680.1 (Oryza sativa), 3'ss of exon 6
ttcatgtacaacctatgtgcaccaaaggctcatgtgcaccggatatgttttttttttaatttcttgatcttctgtaacatgctattgctggtcccctcagGACAATATGTCATGACTATGACAGCACCATTTGGGATGTTCGCATGGTCAGGAGTTTTTCTTGCAACTGCTGGGTTGGTCATGTTCTATAAATGTAGCAG
                        |||   ||| | ||  |         |   ||| || ||      | | |||   | |||    |  | |  ||||| |||||| |||||  ||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||  | |||||||||||||||||||||||
----------------------gtaagtaccatttccaatgt-cgctcactccatttgatctcccacgatgcagtatt-tactacatttcattctttcagGTCAATATATCATGGATATGACAGCACCATTTGGGCTGTTTGCATGGTCAGGAGTTTTCCTTGCAACTGCTGGCCTAGTCATGTTCTATAAATGTAGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32823467|gb|CD963189.1|CD963189
EST:     GTGCACCATTATTGGCATGCTTATTACATACGTACACTCTGTTATATTAG                         GACAATATGTCATGACTATGACAGCACCATTTGGGATGTTCGCATGGTCAG
genomic: GTGCACCATTATTGGCATGCTTATTACATACGTACACTCTGTTATATTAGgtaaatttgt ... gtcccctcagGACAATATGTCATGACTATGACAGCACCATTTGGGATGTTCGCATGGTCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttttttttaatttcttgatcttctgtaacatgctattgctggtcccctcagGACAATATGTCATGACTATGACAGCACCATTTGGGATGTTCGCATGGTCAGGAGTTTTTCTTGCAACTGCTGGGTTGGTCATGTTCTATAAATGTAGCAG
                          ctgtaac  putative branch site (score: 3)
                                              tcccctc  putative PPT
     tttttttaatttcttg  TA-rich tract