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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattcagtgccaacctgccaagtattttctctgtttctttgacaggttagtggaatattcattttctctcactttactactgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCTTTGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGA

Basic information

species Zea mays
transcript GRMZM2G023289_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G023289_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g50480.1 (Oryza sativa), 3'ss of exon 6
gtatgattcagtgccaacctgccaagtatt-ttctctgtttctttgacaggttagtggaatattcattt---tctctcact-ttact---actgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCTTTGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGA
||| || |    ||  || ||  |  | || || | |||||   |  |||| || || |||||   |||   ||  | | | || |    |  |||||| |||||||||||||| |||||||| | |||||||||||| |||||||| |||||||| ||||| |||||||||| | || ||||||||||||||||||
gtaagagttgacgctgacttgttagtttttgttgtttgttttgctcccagggtattgaaatatatgtttcactcctttattcttgcccacatcgcagGTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCTTTTGATGTTGATGTTTTTGACTCTACTATAGATTACATAAAGTTAATGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31353596|gb|CD437953.1|CD437953
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGATgtatgattca ... actactgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211538908|gb|FL379332.1|FL379332
EST:     TAATACAACGAGCAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCT
genomic: TAATACAACGA-CAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGATgtatgattca ... actactgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211092187|gb|FL375383.1|FL375383
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCT-CCAGAT                         GTTGATANTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCCGA-GGCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGATgtatgattca ... actactgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCC-GAAGGCCC
EST: gi|149106401|gb|EE292127.2|EE292127
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGATgtatgattca ... actactgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211445897|gb|FL403744.1|FL403744
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGAT                         GTTGATATTTCTGGGTGTCGGTGTCACCAGCTTCAGTGGACCCCGAAG-CC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGATgtatgattca ... actactgcagGTTGATATTTCTGT-TGTCGGTGTCACCAGCTTCAGTGGACCC-GAAGGCC
EST: gi|211217606|gb|FL408377.1|FL408377
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGAT                         GTTGATATTTNCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAAGGCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGATgtatgattca ... actactgcagGTTGATATTT-CTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAA-GGCC
EST: gi|211012104|gb|FL418130.1|FL418130
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGAA                         GTTGAATATTTCTGGTTGTCGG
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGATgtatgattca ... actactgcagGTTGA-TATTTCTG-TTGTCGG
EST: gi|211079915|gb|FL412204.1|FL412204
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTC-AGAT                         N
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGATgtatgattca ... actactgcag-
EST: gi|211079915|gb|FL412204.1|FL412204
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTC-AGAT                         N
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGATgtatgattca ... actactgcag-
EST: gi|67021929|gb|CO450678.1|CO450678
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGATgtatgattca ... actactgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211111130|gb|FL394545.1|FL394545
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAAGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGATgtatgattca ... actactgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211503690|gb|FL022245.1|FL022245
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGAT                         GTTGATATTTCTGTTGTCGGNGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGATgtatgattca ... actactgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211394811|gb|FL369335.1|FL369335
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAG-CCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGATgtatgattca ... actactgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|31356531|gb|CD440888.1|CD440888
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCTCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGATgtatgattca ... actactgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211099119|gb|FL353128.1|FL353128
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAG
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGATgtatgattca ... actactgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAG
EST: gi|31354050|gb|CD438407.1|CD438407
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGATgtatgattca ... actactgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211445226|gb|FL373040.1|FL373040
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGATgtatgattca ... actactgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|31351485|gb|CD435842.1|CD435842
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGATgtatgattca ... actactgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|149060809|gb|EE157261.2|EE157261
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTTCCAGATgtatgattca ... actactgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtttctttgacaggttagtggaatattcattttctctcactttactactgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCTTTGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGA
                                   ctctcac  putative branch site (score: 3)
                           ttcattttctctcact  CT-rich tract
                       aatattcattttct  TA-rich tract