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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgcatgctttctcaaatgcttactgtgttcctgagggccaaaatgcttatcaattctgcattgacatttgcattgacatttctgaaaatacattactgacacttgcattgacatttgcattgacactctgtaatctaactatgcagGCTGAGGGCCAAAATGCTTATCAATTCTGCATACAGCCACCGGGTGCTCCTGCGTTTGTCGGAAATAGC

Basic information

species Zea mays
transcript GRMZM2G022837_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G022837_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os09g19734.2 (Oryza sativa), 3'ss of exon 11
gtctgcatgctttctcaaatgcttactgtgttcctgagggccaaaatgcttatcaattctgcattgacatttgcattgacatttctgaaaatacattactgacacttgcattgacatttg---cattgacactctgtaat-ctaactatgcagGCTGAGGGCCAAAATGCTTATCAATTCTGCATACAGCCACCGGGTGCTCCTGCGTTTGTCGGAAATAGC
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------------------------------------------------------------------------------------------gtatattgc-atctcttgtattgctgttaaaacaattagatctttctgacactgaatatacagGTTGAGGGCCAAAATGCTTATCAGTTCTGTATACAGCCACCTGATGCTCCTGCATTTGTTGGAAATAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attactgacacttgcattgacatttgcattgacactctgtaatctaactatgcagGCTGAGGGCCAAAATGCTTATCAATTCTGCATACAGCCACCGGGTGCTCCTGCGTTTGTCGGAAATAGC
                                       taatctaa  TA-rich tract