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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggcaggcaacatctccaattttatatcaactaatgaaactcaagttttgtttgctcatgctttgacaccaaaatttagGATCATGATGGCTCCCACATTAAAGGGTTGCTGATCAACTTCATCCACTCATTCTGGCCGTCTCTTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTA

Basic information

species Zea mays
transcript GRMZM2G021270_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G021270_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA10G11610.1 (Glycine max), 3'ss of exon 6
----gtttggc-aggcaacat-ctccaattttatatcaactaatgaa---actcaagttttgtttgctcatgctttgacaccaaaatttagGATCATGATGGCTCCCACATTAAAGGGTTGCTGATCAACTTCATCCACTCATTCTGGCCGTCTCTTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTA
    ||||    ||  | | | ||    ||||   |   ||| ||     ||  |  || |  | | |||   ||           || ||||||| ||||| |||||||| |||||| |  |||| |||||||| || || |||||||| || || || ||||||||||||||| ||||||| || |  |
gtgggtttatttagatatcgtacttttgttttgctttgtctattgctttcacggagattataatggttcaactttctgggt---ggttcagGATCACGATGGTTCCCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTGCTAAAAGTTCCATCTTTTATGGTTGAATTTACCA

upper sequence: GRMZM2G021270_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA15G43170.1 (Glycine max), 3'ss of exon 6
--------gtttggcaggcaacatctccaatt-ttatatcaactaatgaaactcaagttttgtttgctcatgctttgacacc----aaaatttagGATCATGATGGCTCCCACATTAAAGGGTTGCTGATCAACTTCATCCACTCATTCTGGCCGTCTCTTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTA
         |||      |    | |    ||  | |  | | |  |    ||        | ||  | ||| ||  ||           || ||||||| ||||| |||||||| |||||| |  |||| |||||||| || || |||||||| || || || ||||||||||||||| ||||||| || |  |
gtgggtttatttaaatatcgtagttttgtcttgctttgcctattgcttttgcttccacggagatta-taatggttcaactttctgggtggttcagGATCACGATGGTTCCCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTACTAAAAGTTCCATCTTTTATGGTTGAATTTACCA

upper sequence: GRMZM2G021270_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv13s0064g00560.t01 (Vitis vinifera), 3'ss of exon 6
--------------------------gtttggcaggcaacatctccaattttatatcaactaatgaaactcaagttttgtttgctcatgctttgacaccaaaatt---tagGATCATGATGGCTCCCACATTAAAGGGTTGCTGATCAACTTCATCCACTCATTCTGGCCGTCTCTTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTA
                          | ||  |  || ||   |       | |  |||   |  ||  | |    ||| ||     |  |||    |     ||    |||||||||||||||| ||||| |||||  |  |||| || ||||| || ||||||||||| || || || ||| |||||||||| || ||||||||||| |
gttggccaaacaattccagttttcctgctttacttgcgactgttattggcctttgccaatagagtaatatgagtccttggttaacagtagtttatttcttctcttacacagGATCATGATGGCTCTCACATCAAAGGACTATTGATAAATTTCATTCATTCATTCTGGCCTTCACTGCTAAAAATTCCATCTTTCTTAGTTGAGTTCATAA

upper sequence: GRMZM2G021270_T02 (Zea mays), 3'ss of exon 6
lower sequence: PP1S33_203V6.1 (Physcomitrella patens), 3'ss of exon 8
---------------------------------------------------------------------------------gtttg-gcaggcaacatctccaattttatatcaactaatgaaactcaagttttgtttgct-catgctttgacaccaaaatt-tagGATCATGATGGCTCCCACATTAAAGGGTTGCTGATCAACTTCATCCACTCATTCTGGCCGTCTCTTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTA
                                                                                 || || ||      ||| ||||  ||  | || |||||||  | |||  | |       | | ||||| |       ||    ||||||| ||||| || || || ||||| ||| | |||||||||||||||||||||||||| ||  | || ||| ||||||| ||  | || |||||||| |
gtgtgtatacttcgttttgtttgagtctattagtgtctagatcatattttattagtcttgtaggcgccctttcaagttcctgtgtgtgctaatttcatatccagcttggtgtcgactaatggtaatcagctctaaaaatttacctgcttggcttttgtaaccacagGATCACGATGGGTCTCATATCAAAGGATTGTTAATCAACTTCATCCACTCATTCTGGCCCTCGTTGCTCAAAATTCCATCATTCCTCGTGGAGTTCATCA

upper sequence: GRMZM2G021270_T02 (Zea mays), 3'ss of exon 6
lower sequence: PP1S109_208V6.1 (Physcomitrella patens), 3'ss of exon 8
--------------------------------------------------------------------------------gtttggcaggcaacatctccaattttatatcaactaatgaaactcaagtt-----ttgtttgctcatgctttgacaccaaaatt---------tagGATCATGATGGCTCCCACATTAAAGGGTTGCTGATCAACTTCATCCACTCATTCTGGCCGTCTCTTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTA
                                                                                 | | ||| |   |  ||   ||| | | |  | || || | | |  | |     ||||  |  ||     ||||    |  ||          ||||||| ||||| |||||||| ||||| ||| |||| ||||| || ||||| ||||||||||| || || ||  |||| || ||| | || |||||||| |
gtgtgccatttctgccgacattaaacatgattgtgtttcatgtaactgtggaccaagtatctctcttaatcttttggattctcttgcatgttcctgcttagattatctcttta-tactgtagcgctggctgccagttgtcggtacaatgcatgaccttcagcttgtatgttcgcagGATCACGATGGGTCCCACATCAAAGGATTGTTGATTAACTTTATTCACTCTTTCTGGCCGTCACTGCTCAAGATTCCTTCGTTTCTTGTGGAGTTCATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcaactaatgaaactcaagttttgtttgctcatgctttgacaccaaaatttagGATCATGATGGCTCCCACATTAAAGGGTTGCTGATCAACTTCATCCACTCATTCTGGCCGTCTCTTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTA
                                              aaaattta  TA-rich tract