Sequence
atgc intronic sequence ATGC exonic sequencegtagggtaccagaaagtcttctcatgtataataagtagcacctggttctcctaaaaactagagctcttgctatgtgacctcaagttcacaacattagatatttctccattcagATCAAGGGACCTTCACCTGAAATGGTTGAGTACATCGGAATGCAAAACTTGATTAATGCCATAAAGAGTAGTGTTGGACTGAGTGAAGGGAAACTGCTAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G019358_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g13970.2 (Oryza sativa), 3'ss of exon 6
----------------------------gtagggtaccagaaa-------------gtcttctcatgtataataagtagcacctggttctcctaaaaactagagctcttgct-atgtgacctcaagttcacaacattagat-atttctccattcagATCAAGGGACCTTCACCTGAAATGGTTGAGTACATCGGAATGCAAAACTTGATTAATGCCATAAAGAGTAGTGTTGGACTGAGTGAAGGGAAACTGCTAT
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gtagctgcatcaatacattccttctcttgtagaatataagtaacaatggatgactgacatcctcattcccaacatacaacatggaaatattgcatcagtttgcacttttgctcgttcaaaagctagttcattatattattttgttatgcctatcagATCAAGGGACCTTCACCTGAAATGGTAGAATACCTTGGAATGCAAAACTTGATTAATGCTGTCAAGAACAGTGTGGGTCTGACTGAAGGGAAACTGCTTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|148936820|gb|EC880961.2|EC880961EST: -GGCATCAAATTTTTCGAACCTGAG ATCAAGGGACCTTCACCTGAAATGGTTGAGTACATCGGAATGCAAAACTTG
genomic: AGGCATCAAATTTTTCGAACCTGAGgtagggtacc ... ctccattcagATCAAGGGACCTTCACCTGAAATGGTTGAGTACATCGGAATGCAAAACTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagagctcttgctatgtgacctcaagttcacaacattagatatttctccattcagATCAAGGGACCTTCACCTGAAATGGTTGAGTACATCGGAATGCAAAACTTGATTAATGCCATAAAGAGTAGTGTTGGACTGAGTGAAGGGAAACTGCTAT
tttctccattc CT-rich tract
aacattagatattt TA-rich tract