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gtaagaaacctcaatggcagatggcttgcacctcatgaattttgtcagtatatctcactacatttgaagagctggtaatttatgactacaatatttacagGCTACAGGTGGGACTTTCCTCCCAGATGTAGTATCAGATATTGTTACACAAAGGTGGGATCATGAGAATAAACAGTTCTCATTACCTCCTCTGATGACCC
species | Zea mays |
transcript | GRMZM2G019260_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGAGTCAACGCTATGTAAGGTTTTCTCCAGAAATACTCTCCTCGTCTCAG GCTACAGGTGGCACTTTCCTCCCAGATGTAGTATCAGATATTGTTACACAAEST: gi|17970040|gb|BM276808.1|BM276808
genomic: GGAGTCAACGCTATGTAAGGTTTTCTCCAGAAATACTCTC---GTCTCAGgtaagaaacc ... atatttacagGCTACAGGTGGGACTTTCCTCCCAGATGTAGTATCAGATATTGTTACACAA
EST: GGAGTCAACGCTATGTAAGGTTTTCTCCAGAAATACTCTCCTCGTCTCAG GCTACAGGTGGCACTTTCCTCCCAGATGTAGTATCAGATATTGNTACACAAEST: gi|58029394|gb|CX724821.1|CX724821
genomic: GGAGTCAACGCTATGTAAGGTTTTCTCCAGAAATACTCTC---GTCTCAGgtaagaaacc ... atatttacagGCTACAGGTGGGACTTTCCTCCCAGATGTAGTATCAGATATTGTTACACAA
EST: GGAGTCAACGCTATGTAAGGTTTTCTCCAGAAATACTCTCCTCGTCTCAG GCTACAGGTGGCACTTTCCTCCCAGATGTAGTATCAGATATTGTTACACAAEST: gi|78180064|gb|DV550437.1|DV550437
genomic: GGAGTCAACGCTATGTAAGGTTTTCTCCAGAAATA--CT-CTCGTCTCAGgtaagaaacc ... atatttacagGCTACAGGTGGGACTTTCCTCCCAGATGTAGTATCAGATATTGTTACACAA
EST: GGAGTCAACGCTATGTAAGGTTTTCTACAGAAATACTCTCCTCTTCTCAG GCTACAGGTGGGACTTTCCTCCCAGATGTAGTATCAGATATTGTTACACA
genomic: GGAGTCAACGCTATGTAAGGTTTTCTCCAGAAATACTCTCGTCT-C--AGgtaagaaacc ... atatttacagGCTACAGGTGGGACTTTCCTCCCAGATGTAGTATCAGATATTGTTACACA
cagtatatctcactacatttgaagagctggtaatttatgactacaatatttacagGCTACAGGTGGGACTTTCCTCCCAGATGTAGTATCAGATATTGTTACACAAAGGTGGGATCATGAGAATAAACAGTTCTCATTACCTCCTCTGATGACCC
atctcac putative branch site (score: 3)
taatttatgactacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaacctcaatggcagatggcttgcacctcatgaattttgtcagtatatctcactacatttgaagagctggtaatttatgactacaatatttacagGCTACAGGTGGGACTTTCCTCCCAGATGTAGTATCAGATATTGTTACACAAAGGTGGGATCATGAGAATAAACAGTTCTCATTACCTCCTCTGATGACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC