1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acattatattttattcgccaacttatatctttcactgtcctttctcttgggtaagtatgtttacctcttgtaactgattggttgcgattttttttttcagTTTTCAGCTTACCCAGGTACAGGTGGTCATCAGCACGATCTGCAGAGTATGGTTTTGGAGGTTATGCAACGACCAGATATACT
species | Zea mays |
transcript | GRMZM2G018946_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCACTTTACTCCTCAACCAAATCAA TTTTCAGTTTACCCAGGTACAGGTGGTCATCAGCACGATCTGCAGAGTATGEST: gi|71756799|gb|DR954736.1|DR954736
genomic: TTCACTTTACTCCTCAACCAAATCAAgtaagaaacc ... tttttttcagTTTTCAGCTTACCCAGGTACAGGTGGTCATCAGCACGATCTGCAGAGTATG
EST: CTGGTGGAGCTAGAGAACAGCAAGTTCACTTTACTCCTCAACCAAATCAA TTTTCAGCTTACCCAGGTACAGGTGGTCATCAGCACGATCTGCAGAGTATGEST: gi|31558427|gb|CD527639.1|CD527639
genomic: CTGGTGGAGCTAGAGAACAGCAAGTTCACTTTACTCCTCAACCAAATCAAgtaagaaacc ... tttttttcagTTTTCAGCTTACCCAGGTACAGGTGGTCATCAGCACGATCTGCAGAGTATG
EST: GTGGTGGAGCTAGAGAACAGCAAGTTCACTTTACTCCTCAACCAAATCAA TTTTCAGCTTACCCAGGTACAGGTGGTCATCAGCACGATCTGCAGAGTATGEST: gi|91876765|gb|EB406722.1|EB406722
genomic: CTGGTGGAGCTAGAGAACAGCAAGTTCACTTTACTCCTCAACCAAATCAAgtaagaaacc ... tttttttcagTTTTCAGCTTACCCAGGTACAGGTGGTCATCAGCACGATCTGCAGAGTATG
EST: CTGGTGGAGCTAGAGAACAGCAAGTTCACTTTACTCCTCAACCAAATCAA TTTTCAGCTTACCCAGGTACAGGTGGTCATCAGCACGATCTGCAGAGTATGEST: gi|78088915|gb|DV517308.1|DV517308
genomic: CTGGTGGAGCTAGAGAACAGCAAGTTCACTTTACTCCTCAACCAAATCAAgtaagaaacc ... tttttttcagTTTTCAGCTTACCCAGGTACAGGTGGTCATCAGCACGATCTGCAGAGTATG
EST: CTGGTGGAGCTAGAGAACAGCAAGTTCACTTTACTCCTCAACCAAATCAA TTTTCAGCTTACCCAGGTACAGGTGGTCATCAGCACGATCTGCAGAGTATGEST: gi|78120994|gb|DV539378.1|DV539378
genomic: CTGGTGGAGCTAGAGAACAGCAAGTTCACTTTACTCCTCAACCAAATCAAgtaagaaacc ... tttttttcagTTTTCAGCTTACCCAGGTACAGGTGGTCATCAGCACGATCTGCAGAGTATG
EST: CTGGTGGAGCTAGAGAACAGCAAGTTCACTTTACTCCTCAACCAAATCAA TTTTCAGCTTACCCAGGTACAGGTGGTCATCAGCACGATCTGCAGAGTATG
genomic: CTGGTGGAGCTAGAGAACAGCAAGTTCACTTTACTCCTCAACCAAATCAAgtaagaaacc ... tttttttcagTTTTCAGCTTACCCAGGTACAGGTGGTCATCAGCACGATCTGCAGAGTATG
cttgggtaagtatgtttacctcttgtaactgattggttgcgattttttttttcagTTTTCAGCTTACCCAGGTACAGGTGGTCATCAGCACGATCTGCAGAGTATGGTTTTGGAGGTTATGCAACGACCAGATATACT
cgattttttttttc CT-rich tract
attttttttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acattatattttattcgccaacttatatctttcactgtcctttctcttgggtaagtatgtttacctcttgtaactgattggttgcgattttttttttcagTTTTCAGCTTACCCAGGTACAGGTGGTCATCAGCACGATCTGCAGAGTATGGTTTTGGAGGTTATGCAACGACCAGATATACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - ttcactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttgc