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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctgttctctcttggtacaactctctactggttaatgtatttttatctgtttcaatattgggctgcgatgcactatgattataaatatgttgatctgctacatgcgttatccttttctctgtgcaacactcagatttgtgttattatggttaacactcagatttgcactatgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG

Basic information

species Zea mays
transcript GRMZM2G018177_T02
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18176083|gb|BM351165.1|BM351165
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|17931741|gb|BM268701.1|BM268701
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18162555|gb|BM332394.1|BM332394
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|24766239|gb|CA401394.1|CA401394
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|33467983|gb|CF245032.1|CF245032
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTT
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18168315|gb|BM338155.1|BM338155
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|32935495|gb|CF040307.1|CF040307
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|21626066|gb|BQ620987.1|BQ620987
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|30087627|gb|CB885833.1|CB885833
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|60352667|gb|DN219640.1|DN219640
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|33094781|gb|CF054775.1|CF054775
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|16925608|gb|BM078676.1|BM078676
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|14208462|gb|BG842140.1|BG842140
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18161941|gb|BM331780.1|BM331780
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18165625|gb|BM335464.1|BM335464
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18165365|gb|BM335204.1|BM335204
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCTAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|76012320|gb|DT939490.1|DT939490
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18173240|gb|BM348628.1|BM348628
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|5069936|gb|AI737901.1|AI737901
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|31358045|gb|CD442402.1|CD442402
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|213175742|gb|FM182722.1|FM182722
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18165667|gb|BM335506.1|BM335506
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18172926|gb|BM348314.1|BM348314
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|31405699|gb|CD484431.1|CD484431
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|32908101|gb|CF012914.1|CF012914
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|91874218|gb|EB404175.1|EB404175
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|211522699|gb|FL104754.1|FL104754
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|7227504|gb|AW566145.1|AW566145
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|24765545|gb|CA400704.1|CA400704
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|9731093|gb|BE509845.1|BE509845
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|61118536|gb|DN559497.1|DN559497
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAAGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|28982480|gb|BQ538137.2|BQ538137
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|60341170|gb|DN208143.1|DN208143
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|60397817|gb|DN230633.1|DN230633
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18174112|gb|BM349500.1|BM349500
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|211534317|gb|FL091476.1|FL091476
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCCATGTCAGCCCCTGAG-T
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCC-TGAGGT
EST: gi|211002461|gb|FL361134.1|FL361134
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|78024857|gb|DV493244.1|DV493244
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|17929542|gb|BM266502.1|BM266502
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|50335056|gb|CO530182.1|CO530182
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18169243|gb|BM339083.1|BM339083
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|86468468|gb|DY234838.1|DY234838
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18172280|gb|BM347668.1|BM347668
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18175195|gb|BM350583.1|BM350583
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|18169675|gb|BM339515.1|BM339515
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|76013518|gb|DT940688.1|DT940688
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
EST: gi|91056160|gb|EB166578.1|EB166578
EST:     TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA                         GTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC
genomic: TCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctg ... atgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacactcagatttgtgttattatggttaacactcagatttgcactatgttcccagGTGCACGCCTCCCTGAGGGATTGGGTAAAGATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG
                       ggttaac  putative branch site (score: 3)
                                              tgttccc  putative PPT
         atttgtgttattat  TA-rich tract