1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aggctatacaattatcctaatattattatgaatacgaactccaaactcttgcacattactatgggtgaaagcggttagcatttccttgacttggacacacAAGATAGACAGAGGTGCACATGTTTTCTGGTTGAGGAAAGGAACTTTAGACACACGACCAGATCATATCATCAACCAGATTCATTATGAG
species | Zea mays |
transcript | GRMZM2G017853_T02 |
intron # | 6 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: ATGTTGTTCTTGAGGCAGGAGGCTGTGTTCTCAGGCTGGCTGGACTTTAT AAGATAGACAGAGGTGCACATGTTTTCTGGTTGAGGAAAGGAACTTTAGACEST: gi|74233404|gb|DT641318.1|DT641318
genomic: ATGTTGTTCTTGAGGCAGGAGGCTGTGTTCTCAGGCTGGCTGGACTTTATatatccccaa ... ttggacacacAAGATAGACAGAGGTGCACATGTTTTCTGGTTGAGGAAAGGAACTTTAGAC
EST: ATGTTGTTCTTGAGGCAGGAGGCTGTGTTCTCAGGCTGGCTGGACTTTAT AAGATAGACAGAGGTGCACATGTTTTCTGGTTGAGGAAAGGAACTTTAGACEST: gi|76927172|gb|DV171164.1|DV171164
genomic: ATGTTGTTCTTGAGGCAGGAGGCTGTGTTCTCAGGCTGGCTGGACTTTATatatccccaa ... ttggacacacAAGATAGACAGAGGTGCACATGTTTTCTGGTTGAGGAAAGGAACTTTAGAC
EST: ATGTTGTTCTTGAGGCAGGAGGCTGTGTTCTCAGGCTGGCTGGACTTTAT AAGATAGACAGAGGTGCACATGTTTTTTGGTTGAGGAAAGGAACTTTAGACEST: gi|18177348|gb|BM378558.1|BM378558
genomic: ATGTTGTTCTTGAGGCAGGAGGCTGTGTTCTCAGGCTGGCTGGACTTTATatatccccaa ... ttggacacacAAGATAGACAGAGGTGCACATGTTTTCTGGTTGAGGAAAGGAACTTTAGAC
EST: CAGGCTGGCTGGACTTTAT AAGATAGACAGAGGTGCACATGTTTTCTGGTTGAGGAAAGGAACTTTAGACEST: gi|71310881|gb|DR791743.1|DR791743
genomic: CAGGCTGGCTGGACTTTATatatccccaa ... ttggacacacAAGATAGACAGAGGTGCACATGTTTTCTGGTTGAGGAAAGGAACTTTAGAC
EST: ATGTTGTTCTTGAGGCAGGAGGCTGTGTTCTCAGGCTGGCTGGACTTTAT AAGATAGACAGAGGTGCACATGTTTTCTGGTTGAGGAAAGGAACTTTAGACEST: gi|78089273|gb|DV517647.1|DV517647
genomic: ATGTTGTTCTTGAGGCAGGAGGCTGTGTTCTCAGGCTGGCTGGACTTTATatatccccaa ... ttggacacacAAGATAGACAGAGGTGCACATGTTTTCTGGTTGAGGAAAGGAACTTTAGAC
EST: ATGTTGTTCTTGAGGCAGGAGGCTGTGTTCTCAGGCTGGCTGGACTTTAT AAGATAGACAGAGGTGCACATGTTTTCTGGTTGAGGAAAGGAACTTTAGACEST: gi|211289510|gb|FL460651.1|FL460651
genomic: ATGTTGTTCTTGAGGCAGGAGGCTGTGTTCTCAGGCTGGCTGGACTTTATatatccccaa ... ttggacacacAAGATAGACAGAGGTGCACATGTTTTCTGGTTGAGGAAAGGAACTTTAGAC
EST: ATGTTGTTCTTGAGGCAGGAGGCTGTGTTCTCAGGCTGGCTGGACTTTAT AAGATAGACAGAGGTGCACATGTTTTCTGGTTGAGGAAAGGAACTTTAGACEST: gi|78085441|gb|DV513834.1|DV513834
genomic: ATGTTGTTCTTGAGGCAGGAGGCTGTGTTCTCAGGCTGGCTGGACTTTATatatccccaa ... ttggacacacAAGATAGACAGAGGTGCACATGTTTTCTGGTTGAGGAAAGGAACTTTAGAC
EST: ATGTTGTTCTTGAGGCAGGAGGCTGTGTTCTCAGGCTGGCTGGACTTTAT AAGATAGACAGAGGTGCACATGTTTTTTGGTTGAGGAAAGGAACTTTAGAC
genomic: ATGTTGTTCTTGAGGCAGGAGGCTGTGTTCTCAGGCTGGCTGGACTTTATatatccccaa ... ttggacacacAAGATAGACAGAGGTGCACATGTTTTCTGGTTGAGGAAAGGAACTTTAGAC
ctcttgcacattactatgggtgaaagcggttagcatttccttgacttggacacacAAGATAGACAGAGGTGCACATGTTTTCTGGTTGAGGAAAGGAACTTTAGACACACGACCAGATCATATCATCAACCAGATTCATTATGAG
ttccttgac putative branch site
attactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggctatacaattatcctaatattattatgaatacgaactccaaactcttgcacattactatgggtgaaagcggttagcatttccttgacttggacacacAAGATAGACAGAGGTGCACATGTTTTCTGGTTGAGGAAAGGAACTTTAGACACACGACCAGATCATATCATCAACCAGATTCATTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - -cttgcac