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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggatcactttatttaccctgaccgatctgtttatgctataagttttttctgttgaacattttacttgcctgtttgtgctaataaaatctatctccaatatcttggagaatgtgctttctctacatttttcatgattgacatgtttactcttgctaatatctgattacttcttttcagATTCCTACAAATATGAATGGCCTTATTGAATATAGGGCACATCCTTTCTGGGTACAAAAATACTGTCCTTCACATGAAATGGATGGTACTCCGAGGTGCT

Basic information

species Zea mays
transcript GRMZM2G017845_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017845_T04 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os06g08400.1 (Oryza sativa), 3'ss of exon 6
gtaaggatcactttatttaccctgaccgatctgtttatgctataagttttttctgttgaacattttacttgcctgtttgtgctaataaaatctatctccaatatcttggagaatgtgctttctctacatttttcatgattgacatgtttactcttgctaatatctgattacttctt-ttcagATTCCTACAAATATGAATGGCCTTATTGAATATAGGGCACATCCTTTCTGGGTACAAAAATACTGTCCTTCACATGAAATGGATGGTACTCCGAGGTGCT
                                                                         |  |||  |   | |||  | |   || | | ||    ||   ||   |  |   |||||  |  || | |||     |||| |          || |||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||| ||||||||  |||| |||||||| || ||||
-----------------------------------------------------------------------aataattg-acatgtgaaagttgttaaca-tgtgttaagtaaca-gccgacaatttctttttgtttttttaaatgcgccatcttac--------agttccttcttattcagATTCCTACAAATATGAATGGCCTGATTGAATATAGAGCACATCCTTTCTGGTTACAAAAATACTGTCCATCACATGAGGTGGACGGTACTCCAAGATGCT

upper sequence: GRMZM2G017845_T04 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA16G25750.1 (Glycine max), 3'ss of exon 6
gtaaggatcactttatttaccctgaccgatctgtttatgctataagttttttctgttgaacattttacttgcctgtttgtgctaataaaatctatctccaatatcttggagaatgtgctttctctacatttttcatgattgacatgtttactcttgctaatatctgattacttctt--ttcagATTCCTACAAATATGAATGGCCTTATTGAATATAGGGCACATCCTTTCTGGGTACAAAAATACTGTCCTTCACATGAAATGGATGGTACTCCGAGGTGCT
                                                                         |  || |   | || ||  | ||  |  ||| |||          | | || |  ||  |  | || || ||     | |     |||     |||  |  |   ||||||| ||  |||||     |||||| ||||| ||||| |||||||||||||||  ||||||||| ||||| || |||||    |||||||||||  | || |
-------------------------------------------------------------------------tcctttttgaattacaaattgtccgctttattttg---------ttctttcaattttgctagttatagatataca-gcgcaattgaatgatcaatttttgttcaattcagATCCCACCAAATTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCGACAAAAATATTGTCCATCGCATGAGGGTGATGGTACTCCTCGTTGTT

upper sequence: GRMZM2G017845_T04 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA14G08450.1 (Glycine max), 3'ss of exon 6
gtaaggatcactttatttaccctgaccgatctgtttatgctataagttttttctgttgaacattttacttgcctgtttgtgctaataaaatctatctccaatatcttggagaatgtgctttctctacatttttcatgattgacatgtttactcttgctaatatctgattacttcttttcagATTCCTACAAATATGAATGGCCTTATTGAATATAGGGCACATCCTTTCTGGGTACAAAAATACTGTCCTTCACATGAAATGGATGGTACTCCGAGGTGCT
                                                                          | || ||  || || |  |   |  ||  | |       |   |||   |   || | ||||        ||||   | ||| |||||| |    | || ||  |||||||| ||||||     ||| ||||||||||||||||||||||| |||||| | || ||||| || ||| | || |||   ||||||||| |  | || |
-----------------------------------------------------------------------ttagattttg--aaaaagacatgcttttaagttttcacc---ttgacttcaaccttatatctcattgcctgt-tgttggtttttggtaatatat----attttttcacagATTCCAACAAATCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGATCCAGAAATATTGCCCTACTCACGAACATGATGGTACTACACGCTGTT

upper sequence: GRMZM2G017845_T04 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA02G06720.2 (Glycine max), 3'ss of exon 6
gtaaggatcactttatttaccctgaccgatctgtttatgctataagttttttctgttgaacattttacttgcctgtttgtgctaataaaatctatctccaatatcttggagaatgtgctttctctacatttttcatgattgacatgtt-tactcttgctaatatctgattact--tcttttcagATTCCTACAAATATGAATGGCCTTATTGAATATAGGGCACATCCTTTCTGGGTACAAAAATACTGTCCTTCACATGAAATGGATGGTACTCCGAGGTGCT
                                                                       | | ||||   |  || ||| |  |  |  ||| |       ||| |||||  |   ||| |  | || || ||    |||  |||  |||   |||||  |  || || ||||||||  |||||     ||| || ||||| ||||| ||||||||||||||| |||||||||| ||||| || |||||    |||||||||||  | || |
-----------------------------------------------------------------------cttttttgaatt--tagaat-tgcccactttattt-------tgttctttcaat-tttttctagttatagatataaagtacaattg--aatgattgatttttgttcattgcagATTCCACCAAATTCAGCTGGTCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCGCATGAGCGTGATGGTACTCCTCGCTGTT

upper sequence: GRMZM2G017845_T04 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA11G06650.2 (Glycine max), 3'ss of exon 2
gtaaggatcactttatttaccctgaccgatctgtttatgctataagttttttctgttgaacattttacttgcctgtttgtgctaa--taaaatctatctccaatatcttggagaatgtgctttctctacatttttcatgattgacatgtttactcttgctaatatctgattacttcttttcagATTCCTACAAATATGAATGGCCTTATTGAATATAGGGCACATCCTTTCTGGGTACAAAAATACTGTCCTTCACATGAAATGGATGGTACTCCGAGGTGCT
                                                                        ||   ||  |  |  | || | |   |    | | |   | ||  ||        | || ||      |  ||  |            |||   || ||  ||| ||  |||| || || |||     |||||| ||||| ||||| || |||||||||||| ||||||||||||| || ||||||||  | ||||| ||| |  | || |
-----------------------------------------------------------------------tcttcatgaacagaccttaagtttgcgttttttttttaaaaaaaaatggcagtaagatatattgttcagtaaactag------------aattattggttctttccttgtagATCCCAACTAATTCATCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATACTGCCCATCACATGAGCTTGATGGCACTTCTCGTTGTT

upper sequence: GRMZM2G017845_T04 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA12G19010.1 (Glycine max), 3'ss of exon 5
gtaaggatcactttatttaccctgaccgatctgtttatgctataagttttttctgttgaacattttacttgcctgtttgtgctaataaaatctatctccaatatcttggagaatgtgctttctctacatttttca-tgattgacatgtt-tactcttgctaatatctgattact--tcttttcagATTCCTACAAATATGAATGGCCTTATTGAATATAGGGCACATCCTTTCTGGGTACAAAAATACTGTCCTTCACATGAAATGGATGGTACTCCGAGGTGCT
                                                                        |  ||| ||  ||| | |  | ||  |  ||| |||          | | || || ||||  | | || || ||    |||  |||  |||   |||||  |  || || ||||||||  |||||     ||| || ||||| ||||| ||||||||||||||| |||||||||| ||||| || |||||    |||||||||||  | || |
------------------------------------------------------------------------ccttttttg--aattagaattgtccactttattttg---------ttctttcaactttttctagttatagatataaagtacaattg--aatgattgatttttgttcattgcagATTCCACCAAATTCAGCTGGTCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCGCATGAGCGTGATGGTACTCCTCGCTGTT

upper sequence: GRMZM2G017845_T04 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA01G38640.3 (Glycine max), 3'ss of exon 3
gtaaggatcactttatttaccctgaccgatctgtttatgctataagttttttctgttgaacattttacttgcctgtttgtgctaataaaatctatctccaatatcttggagaatgtgctttctctacatttttcatgattgacatgtttactcttgctaatatctgattacttcttttcagATTCCTACAAATATGAATGGCCTTATTGAATATAGGGCACATCCTTTCTGGGTACAAAAATACTGTCCTTCACATGAAATGGATGGTACTCCGAGGTGCT
                                                                   |||    |      |    |   |   | | ||| |      | ||||    |    |||||| ||||   |  ||  |            |||   || ||  ||| ||  |||| || || |||     ||| || ||||| ||||| || |||||||||||| ||||||||||||| || ||||||||  | ||||| |||||  | || |
-------------------------------------------------------------------cttcatagaacaaaccttaagtttgccttttcaaaaaagaaaaaaatggcagtaagatacattgttca--gtaaactag------------aattattggttctttccttgtagATCCCAACTAATTCATCTGGTCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATACTGCCCATCACATGAGCTTGATGGCACTCCTCGTTGTT

upper sequence: GRMZM2G017845_T04 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA17G36620.1 (Glycine max), 3'ss of exon 5
gtaaggatcactttatttaccctgaccgatctgtttatgctataagttttttctgttgaacattttacttgcctgtttgtgctaataaaatctatctccaatatcttggagaatgtgctttctctacatttttcatgattgacatgtttactcttgctaatatctgattacttcttttcagATTCCTACAAATATGAATGGCCTTATTGAATATAGGGCACATCCTTTCTGGGTACAAAAATACTGTCCTTCACATGAAATGGATGGTACTCCGAGGTGCT-
                                                                         |  ||||  |  |||     || |   || | |   |  |  |||||  |     ||   | | |      ||||   | ||| |||||| |    | || ||  |||||||| ||||||     ||| ||||||||||||||||||||||| |||||| | || ||||| || ||| | ||||||   |||||||||||  | || | 
-------------------------------------------------------------------------taattgtttt--taactctcatgttagat-tttaaaaagacatgcttg-taagttttcaccttaacctgt-tgttggtttttggtaatatat----attttttcacagaTTCCAACAAATCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGATCCAGAAATATTGCCCTACTCATGAACATGATGGTACTCCACGCTGTTG

upper sequence: GRMZM2G017845_T04 (Zea mays), 3'ss of exon 6
lower sequence: AT1G19270.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaaggatcactttatttaccctgaccgatctgtttatgctataagttttttctgttgaacattttacttgcctgtttgtgctaataaaatctatctccaatatcttggagaat-gtgctttctct-acatttttcatgattgacatgtttactcttgctaatatctgattacttcttttcagATTCCTACAAATATGAATGGCCTTATTGAATATAGGGCACATCCTTTCTGGGTACAAAAATACTGTCCTTCACATGAAATGGATGGTACTCCGAGGTGCT
                                                   |  ||  | |  ||| |||  || |   |       | |  ||| | || | | |||  |  | || |    ||| ||| || || |   |  | |  ||  |||  | ||| |   | | ||| |   ||||| || ||||||     ||| |||||||||||||||||||||||||| ||||| || || || |||||||| || |||   |||| ||| ||||| || |
--------------------------------------------------gtacgtaaacctctttccttttctatcattttagcccataaatatattca-tgtgttgttgttttgttccggatcttacacttatcgtctgttgctttgtttttctcccgaatgt--aaattctt-tgaacagATACCAACAAATCATGCTGGTCTTATTGAATATAGGGCACATCCTTTTTGGGTTCAGAAGTATTGTCCTTCTCACGAACACGATGCTACCCCGAGATGTT

upper sequence: GRMZM2G017845_T04 (Zea mays), 3'ss of exon 6
lower sequence: AT4G36860.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaaggatcactttatttaccctgaccgatctgtttatgctataagttttttctgttgaacattttacttgcctgtttgtgctaataaaatctatctccaatatcttggagaatgtgctttctctacatttttcatgattgacatgtttactcttgctaatatctgattacttcttttcagATTCCTACAAATATGAATGGCCTTATTGAATATAGGGCACATCCTTTCTGGGTACAAAAATACTGTCCTTCACATGAAATGGATGGTACTCCGAGGTGCT
                                                                     ||  || | |  | | |    |  ||||| | ||| ||    ||  |   ||| |    | |   | | || |  ||| |     |   |||      | ||| || |  ||||||| ||||||     ||| |||||||| |||||||||||||| || ||| | ||||| || ||||||||||||||    ||||| |||||  |||| |
--------------------------------------------------------------------gtgagtgatagc-caacttctgttgatctcta-tattttacccaaaatttgttcccaggttgtactaagcttaatgtgtatg----tataaat-----gtaactcctct--agATTCCGACAAATCCAGCTGGTCTTATTGAGTATAGGGCACATCCCTTTTGGATGCAAAAGTATTGTCCTTCACATGAGCGTGATGGAACTCCTCGGTGTT

upper sequence: GRMZM2G017845_T04 (Zea mays), 3'ss of exon 6
lower sequence: Vv18s0001g11820.t01 (Vitis vinifera), 3'ss of exon 6
gtaaggatcactttatttaccctgaccgatctgtttatgctataagttttttctgttgaacattttacttgcctgtttgtgctaataaaatct-atctccaatatcttggagaatgtgctttctc-tacatttttcatgattgacatgtttactcttgctaatatctgattacttcttttcagATTCCTACAAATATGAATGGCCTTATTGAATATAGGGCACATCCTTTCTGGGTACAAAAATACTGTCCTTCACATGAAATGGATGGTACTCCGAGGTGCT
                                                                                   || |||||   || | |||| |       | | | | ||    ||| |   ||||  |     ||| |    ||  |   |  | | ||  | ||| |||||||| || ||      ||| ||||||||||||||||| |||||||| ||||| || || ||||| ||||| |||||    ||  | || || || ||||
-----------------------------------------------------------------------------------aagaaaatgagatatgcaattttactactattcttcctttggatacttcactcattttcagtttgtgttggtttcttggaacataaatatatttttacagATTCCAACGAACCCTGCTGGTCTTATTGAATATAGGGCGCATCCTTTTTGGGTTCAGAAGTACTGCCCTTCTCATGAGCATGACAGAACACCTAGATGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttttcatgattgacatgtttactcttgctaatatctgattacttcttttcagATTCCTACAAATATGAATGGCCTTATTGAATATAGGGCACATCCTTTCTGGGTACAAAAATACTGTCCTTCACATGAAATGGATGGTACTCCGAGGTGCT
                                         ttacttcttttc  CT-rich tract
                               taatatct  TA-rich tract