1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tatcataaaaaaggcagcctgccaatcctttgttttttatatatactacaaacattacgcagggtatgcttctgttactgatttattcatcttcctgtagGGTGCTGAGTTCGAGCTTGATACCATCAAAAAATTGTCAAAGGAGTATGCAGAAGCAAAGGAACTGGCCCTTGCAG
species | Zea mays |
transcript | GRMZM2G017584_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTTATTTGCAAATAGCCAAGCAGAAAGATATATGCACATGGACTTG GGTGCTGAGTTCGAGCTTGATACCATCAAAAAATTGTCAAAGGAGTATGCAEST: gi|149088812|gb|EE177939.2|EE177939
genomic: GTTATTTGCAAATAGCCAAGCAGAAAGATATATGCACATGGACTTGgtaagttcaa ... cttcctgtagGGTGCTGAGTTCGAGCTTGATACCATCAAAAAATTGTCAAAGGAGTATGCA
EST: GTTATTTGCAAATAGCCAAGCAGAAAGATATATGCACATGGACTTG GGTGCTGAGTTCGAGCTTGATACCATCAAAAAATTGTCAAAGGAGTATGCAEST: gi|148954015|gb|EC899413.2|EC899413
genomic: GTTATTTGCAAATAGCCAAGCAGAAAGATATATGCACATGGACTTGgtaagttcaa ... cttcctgtagGGTGCTGAGTTCGAGCTTGATACCATCAAAAAATTGTCAAAGGAGTATGCA
EST: GTTATTTGCAAATAGCCAAGCAGAAAGATATATGCACATGGACTTG GGTGCTGAGTTCGAGCTTGATACCATCAAAAAATTGTCAAAGGAGTATGCAEST: gi|32165048|gb|CD670366.1|CD670366
genomic: GTTATTTGCAAATAGCCAAGCAGAAAGATATATGCACATGGACTTGgtaagttcaa ... cttcctgtagGGTGCTGAGTTCGAGCTTGATACCATCAAAAAATTGTCAAAGGAGTATGCA
EST: GTTATTTGCAAATAGCCAAGCAGAAAGATATATGCACATGGACTTG GGTGCTGAGTTCGAGCTTGATACCATCAAAAAATTGTCAAAGGAGTATGCAEST: gi|30032130|gb|CB833981.1|CB833981
genomic: GTTATTTGCAAATAGCCAAGCAGAAAGATATATGCACATGGACTTGgtaagttcaa ... cttcctgtagGGTGCTGAGTTCGAGCTTGATACCATCAAAAAATTGTCAAAGGAGTATGCA
EST: GTTATTTGCAAATAGCCAAGCAGAAAGATATATGCACATGGACTTG GGTGCTGAGTTCGAGCTTGATACCATCAAAAAATTGTCAAAGGAGTATGCAEST: gi|71326297|gb|DR799838.1|DR799838
genomic: GTTATTTGCAAATAGCCAAGCAGAAAGATATATGCACATGGACTTGgtaagttcaa ... cttcctgtagGGTGCTGAGTTCGAGCTTGATACCATCAAAAAATTGTCAAAGGAGTATGCA
EST: GTTATTTGCAAATAGCCAAGCAGAAAGATATATGCACATGGACTTG GGTGCTGAGTTCGAGCTTGATACCATCAAAAAATTGTCAAAGGAGTATGCAEST: gi|31910411|gb|CD651410.1|CD651410
genomic: GTTATTTGCAAATAGCCAAGCAGAAAGATATATGCACATGGACTTGgtaagttcaa ... cttcctgtagGGTGCTGAGTTCGAGCTTGATACCATCAAAAAATTGTCAAAGGAGTATGCA
EST: GTTATTTGCAAATAGCCAAGCAGAAAGATATATGCACATGGACTTG GGTGCTGAGTTCGAGCTTGATACCATCAAAAAATTGTCAAAGGAGTATGCAEST: gi|78116765|gb|DV535152.1|DV535152
genomic: GTTATTTGCAAATAGCCAAGCAGAAAGATATATGCACATGGACTTGgtaagttcaa ... cttcctgtagGGTGCTGAGTTCGAGCTTGATACCATCAAAAAATTGTCAAAGGAGTATGCA
EST: GGTATTTGCAAATAGCCAAGCAGAAAGATATATGCACATGGACTTG GGTGCTGAGTTCGAGCTTGATACCATCAAAAAATTGTCAAAGG
genomic: GTTATTTGCAAATAGCCAAGCAGAAAGATATATGCACATGGACTTGgtaagttcaa ... cttcctgtagGGTGCTGAGTTCGAGCTTGATACCATCAAAAAATTGTCAAAGG
ctacaaacattacgcagggtatgcttctgttactgatttattcatcttcctgtagGGTGCTGAGTTCGAGCTTGATACCATCAAAAAATTGTCAAAGGAGTATGCAGAAGCAAAGGAACTGGCCCTTGCAG
tactgat putative branch site (score: 26)
tttattcatcttcct CT-rich tract
atttattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcataaaaaaggcagcctgccaatcctttgttttttatatatactacaaacattacgcagggtatgcttctgttactgatttattcatcttcctgtagGGTGCTGAGTTCGAGCTTGATACCATCAAAAAATTGTCAAAGGAGTATGCAGAAGCAAAGGAACTGGCCCTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - -taaaaaa
- - - - - - - - gcctgcc
- - - - - - - - - - - - - - - tgttttt
- - - - - - - - - - - - - - - - - - - - - - -ctacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgatt