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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatctattttttttactattttcacgtttcctgtgcttcccatttatcatggtgacttgtggccatctgtttattccttttgtgctactacccgtagGATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTTTATGCTTGTTTTGCCGTTATTTAAAGCTACTGGTAATATCCTACTGCAA

Basic information

species Zea mays
transcript GRMZM2G017365_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017365_T08 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g58580.1 (Oryza sativa), 3'ss of exon 6
gtaaaatctattttttttactattttcacg--tttcctgtgcttcccatttatcatggtgacttgtggccatctgtttattcct--------tttgtgc-tactacccgta-gGATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTTTATGCTTGTTTTGCCGTTATTTAAAGCTACTGGTAATATCCTACTGCAA
              |    ||||| | |||  ||| ||||||  | |   | | | ||| |||| | ||       ||| ||||        ||| ||| |||| |   || || |||| ||||| || ||  ||||||||||||| || |||||||||||||| ||||||||||||||  | ||||| ||||||||||||||||| ||||||
-------------gtaaatctattctgacgaattttctgtgcccctctaatgttacggtcacttttagcttggcacttaatcctaaaatgactttatgcctactgcttttaagGGTTGAAAATGCGGAAGTGTTGTGCCTGGGAATTGTTTCAGTGGCAGTGTTCATGCTTGTTTTGCCACTCTTTAAGGCTACTGGTAATATCCTTCTGCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116821095|gb|EC864381.1|EC864381
EST:     GCTTGATACTAGCTTCTTGGTTTCTTTCATTGGG                         GATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTT
genomic: GCTTGATACTAGCTTCTTGGTTTCTTTCATTGGGgtaaaatcta ... ctacccgtagGATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTT
EST: gi|9953706|gb|BE640289.1|BE640289
EST:     GCTTGATACTAGCTTCTTGGTTTCTTTCATTGGG                         GATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTT
genomic: GCTTGATACTAGCTTCTTGGTTTCTTTCATTGGGgtaaaatcta ... ctacccgtagGATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTT
EST: gi|211384669|gb|FL388814.1|FL388814
EST:     GCTTGATACTAGCTTCTTGGTTTCTTTCATTGGG                         GATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTT
genomic: GCTTGATACTAGCTTCTTGGTTTCTTTCATTGGGgtaaaatcta ... ctacccgtagGATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatcatggtgacttgtggccatctgtttattccttttgtgctactacccgtagGATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTTTATGCTTGTTTTGCCGTTATTTAAAGCTACTGGTAATATCCTACTGCAA
                         tgtttatt  TA-rich tract