1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aactatgtgatctagtttggtgggttggaagattttgaggggtcatgaggataaacaaatgtataatactgacagttcttttttgtctggttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAG
species | Zea mays |
transcript | GRMZM2G017086_T05 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGTCTTGGATCAAAGTGGTCGCCCTGGTGCACCTCTACA-TTCTTGCAG ACACTGCGTAAAAAATACCCCGCA-TTTGC-CAGCAGCATAATAEST: gi|241994792|gb|GR421145.1|GR421145
genomic: TGATCTTG-ATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCC-GCAATTTGCACAGCAGCATAATA
EST: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG ACACTGCGTAAAAAATACCCGCAATTTGCGCAGCAGCATAATAATGTCTACEST: gi|211536230|gb|FL396283.1|FL396283
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: GTGATCTTGATCNAAGTGTTCGCCCTGGTGCACCTCTACNATTCTTGCAG ACACTGCGTAAAAA-TACCCGCAEST: gi|32935100|gb|CF039912.1|CF039912
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCA
EST: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACEST: gi|31998167|gb|CD661962.1|CD661962
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: GTGATCTTGATCAAAGGGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG ACACTGCGTAAAAAAEST: gi|33094903|gb|CF054897.1|CF054897
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAA
EST: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
tgaggataaacaaatgtataatactgacagttcttttttgtctggttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAG
tactgac putative branch site (score: 674)
ataaacaaatgtataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactatgtgatctagtttggtgggttggaagattttgaggggtcatgaggataaacaaatgtataatactgacagttcttttttgtctggttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAG
- ctatgtg
- - - - - - - - -tggtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tactgac