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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aactatgtgatctagtttggtgggttggaagattttgaggggtcatgaggataaacaaatgtataatactgacagttcttttttgtctggttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAG

Basic information

species Zea mays
transcript GRMZM2G017086_T02
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32934266|gb|CF039078.1|CF039078
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|32866635|gb|CF006317.1|CF006317
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACGATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|241994792|gb|GR421145.1|GR421145
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCGCAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|32932531|gb|CF037343.1|CF037343
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|211437528|gb|FK975648.1|FK975648
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCGCAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|32863109|gb|CF002791.1|CF002791
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTNNNNNNNTACCCGCAATTTGCACAGCAGCATAATAATGTCTA
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAA-TACCCGCAATTTGCACAGCAGCATAATAATGTCTA
EST: gi|32935100|gb|CF039912.1|CF039912
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|32930082|gb|CF034894.1|CF034894
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|32945380|gb|CF050199.1|CF050199
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|32911302|gb|CF016114.1|CF016114
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|32932473|gb|CF037285.1|CF037285
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|211085323|gb|FL409653.1|FL409653
EST:     TGGTCTTGGATCAAAGTGGTCGCCCTGGTGCACCTCTACA-TTCTTGCAG                         ACACTGCGTAAAAAATACCCCGCA-TTTGC-CAGCAGCATAATA
genomic: TGATCTTG-ATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCC-GCAATTTGCACAGCAGCATAATA
EST: gi|74240015|gb|DT647929.1|DT647929
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|32931528|gb|CF036340.1|CF036340
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|67017287|gb|CO446036.1|CO446036
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCGCAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|211536230|gb|FL396283.1|FL396283
EST:     GTGATCTTGATCNAAGTGTTCGCCCTGGTGCACCTCTACNATTCTTGCAG                         ACACTGCGTAAAAA-TACCCGCA
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCA
EST: gi|33094903|gb|CF054897.1|CF054897
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
EST: gi|31998167|gb|CD661962.1|CD661962
EST:     GTGATCTTGATCAAAGGGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAA
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAA
EST: gi|50332356|gb|CO527482.1|CO527482
EST:     GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAG                         ACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC
genomic: GTGATCTTGATCAAAGTGTTCGCCCTGTTGCACCTCTACAATTCTTGCAGgtgaggtcac ... ttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaggataaacaaatgtataatactgacagttcttttttgtctggttttgagcagACACTGCGTAAAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAG
                     tactgac  putative branch site (score: 1)
     ataaacaaatgtataa  TA-rich tract