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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaactgaaaatgcaaaattgtttgaagttaattcttaatcgtcaacactatttgattctaatgtactttttttctttttaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGGAATTCTGATGTTTGTTGCATGGCTG

Basic information

species Zea mays
transcript GRMZM2G016184_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G016184_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g46410.1 (Oryza sativa), 3'ss of exon 6
gtaag-aaactgaaaatgcaaaattgtttgaagttaattcttaatcgtcaacactatttgattctaatg------tactttttttctttttaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGGAATTCTGATGTTTGTTGCATGGCTG
||||| ||  |||  |||    |||  ||| |   | |  ||  || ||     |||||| || |||        | ||    ||  ||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||
gtaagcaagttgagcatgtttcatttcttgtatgaagtcatt--tcatctcagttatttggttataacattctgatgctcggatttattttaagGTTTCTTGACACAGCTGGACTGAAAAAGTCAAGTGCTTACTTGGTTAATGGTATTCTGATGTTCGTTGCATGGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37375483|gb|CF624180.1|CF624180
EST:     TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
genomic: TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaact ... tctttttaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
EST: gi|211033261|gb|FL440337.1|FL440337
EST:     TCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
genomic: TCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaact ... tctttttaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
EST: gi|211179443|gb|FL364371.1|FL364371
EST:     ATGGGTTCTCATTTTCAGAGACAACCACCCCTGAAAATCA-CTTGCGATG                         GTTTCTTGAACCCTGCTGGACTGAAGAAATCAAGGGCTTACTTGG
genomic: ATGG-TTCTCATTT-CAGAGACAACCACCCCTGAAA-TCAACTTGCGATGgtaagaaact ... tctttttaagGTTTCTTGA-CACTGCTGGACTGAAGAAATCAAGTGCTTACTTGG
EST: gi|6465580|gb|AW191175.1|AW191175
EST:     TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
genomic: TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaact ... tctttttaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
EST: gi|86474267|gb|DY240637.1|DY240637
EST:     TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
genomic: TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaact ... tctttttaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
EST: gi|6526808|gb|AW216077.1|AW216077
EST:     CCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGGTAATGG
genomic: CCCCTGAAATCAACTTGCGATGgtaagaaact ... tctttttaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
EST: gi|32910942|gb|CF015754.1|CF015754
EST:     TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
genomic: TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaact ... tctttttaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
EST: gi|60400317|gb|DN233124.1|DN233124
EST:     TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
genomic: TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaact ... tctttttaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
EST: gi|148953652|gb|EC899011.2|EC899011
EST:     TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
genomic: TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaact ... tctttttaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
EST: gi|211286255|gb|FL063748.1|FL063748
EST:     TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
genomic: TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaact ... tctttttaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
EST: gi|83279176|gb|DV943184.1|DV943184
EST:     TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
genomic: TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaact ... tctttttaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
EST: gi|76293603|gb|DV033171.1|DV033171
EST:     TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAAATCA-GTGCTTACTTGGTTAATG
genomic: TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaact ... tctttttaagGTTTCTTGACACTGCTGGACTGAAGAAA-TCAAGTGCTTACTTGGTTAATG
EST: gi|148947020|gb|EC892317.2|EC892317
EST:     TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGATAATGG
genomic: TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaact ... tctttttaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
EST: gi|76286797|gb|DV026365.1|DV026365
EST:     TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTTGTTAATGG
genomic: TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaact ... tctttttaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
EST: gi|67030326|gb|CO459075.1|CO459075
EST:     TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
genomic: TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaact ... tctttttaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
EST: gi|76293602|gb|DV033170.1|DV033170
EST:     TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
genomic: TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaact ... tctttttaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
EST: gi|148947019|gb|EC892316.2|EC892316
EST:     TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
genomic: TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaact ... tctttttaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
EST: gi|50338098|gb|CO533224.1|CO533224
EST:     ACATGGTTCTCATTTCAGAGACAACCACCCCTGAAAATCA-CTTGCGATG                         GTTTCTTGACACTGCTGGACTGA
genomic: ACATGGTTCTCATTTCAGAGACAACCACCCCTGAAA-TCAACTTGCGATGgtaagaaact ... tctttttaagGTTTCTTGACACTGCTGGACTGA
EST: gi|148953653|gb|EC899012.2|EC899012
EST:     TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
genomic: TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaact ... tctttttaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
EST: gi|83278187|gb|DV942195.1|DV942195
EST:     TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
genomic: TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaact ... tctttttaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
EST: gi|67017667|gb|CO446416.1|CO446416
EST:     TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
genomic: TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaact ... tctttttaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
EST: gi|76280960|gb|DV020528.1|DV020528
EST:     TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAAATCA-GTGCTTACTTGGTTAATN
genomic: TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaact ... tctttttaagGTTTCTTGACACTGCTGGACTGAAGAAA-TCAAGTGCTTACTTGGTTAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaattcttaatcgtcaacactatttgattctaatgtactttttttctttttaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGGAATTCTGATGTTTGTTGCATGGCTG
                            ttctaat  putative branch site (score: 2)
                                  tgtactttttttcttt  CT-rich tract
                           attctaatgtactttt  TA-rich tract