Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctgcatttgtccttcgattttactcccatggttttgtattgcaccagactgttttcctcactgaacaaattgtgatgcagATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG

Basic information

species Zea mays
transcript GRMZM2G015869_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015869_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os12g18110.1 (Oryza sativa), 3'ss of exon 6
gtaagctgcatttgtccttcgattttactccc--atggttttgtattgcaccagactgttttcctcactgaacaaattgtgatgcagATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
|||||||||||| |||||| |||  || |     ||   | |  | |    ||||   |||| || |||||||| |||||| |||||| ||  | ||||| ||||||||||| ||||||||||||||||||||||||
gtaagctgcattggtcctttgatcatagtgtatgatatatattaagtatgtcagatatttttactgactgaacatattgtgttgcagACACGCTAGTGAACTTCTATGGAAATATTGGGAAAACCCTTCTTTCATTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60338746|gb|DN205719.1|DN205719
EST:     AGGAGGGGTGCTGAATTTTTGTCAGATGGGTGTGCAGTCTATAGATCAAC                         ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
genomic: AGGAGGGGTGCTGAATTTTTGTCAGATGGGTGTGCAGTCTATAGATCAACgtaagctgca ... tgtgatgcagATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
EST: gi|78092412|gb|DV520786.1|DV520786
EST:     AGGAGGGGTGCTGAATTTTTGTCAGAGGGGTGTGCAGTCTATAGATCAAC                         ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
genomic: AGGAGGGGTGCTGAATTTTTGTCAGATGGGTGTGCAGTCTATAGATCAACgtaagctgca ... tgtgatgcagATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
EST: gi|166698057|gb|EG194972.1|EG194972
EST:     CTGAA-TTTTGTCAGATGGGTGTGCAGTCTATAGATCAAC                         ATAACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
genomic: CTGAATTTTTGTCAGATGGGTGTGCAGTCTATAGATCAACgtaagctgca ... tgtgatgcagAT-ACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
EST: gi|78084914|gb|DV513307.1|DV513307
EST:     AGGAGGGGTGCTGAATTTTTGTCAGATGGGTGTGCAGTCTATAGATCAAC                         ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
genomic: AGGAGGGGTGCTGAATTTTTGTCAGATGGGTGTGCAGTCTATAGATCAACgtaagctgca ... tgtgatgcagATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
EST: gi|5932718|gb|AW057079.1|AW057079
EST:     GAATTTTTGTCAGATGGGTGTGCAGTCTATAGATCAAC                         ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
genomic: GAATTTTTGTCAGATGGGTGTGCAGTCTATAGATCAACgtaagctgca ... tgtgatgcagATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
EST: gi|50323027|gb|CO518153.1|CO518153
EST:     AGGAGGGGTGCTGAATTTTTGTCAGATGGGTGTGCAGTCTATAGATCAAC                         ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
genomic: AGGAGGGGTGCTGAATTTTTGTCAGATGGGTGTGCAGTCTATAGATCAACgtaagctgca ... tgtgatgcagATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
EST: gi|78081909|gb|DV510321.1|DV510321
EST:     AGGAGGGGTGCTGAATTTTTGTCAGATGGGTGTGCAGTCTATAGATCAAC                         ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
genomic: AGGAGGGGTGCTGAATTTTTGTCAGATGGGTGTGCAGTCTATAGATCAACgtaagctgca ... tgtgatgcagATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
EST: gi|211091569|gb|FL457271.1|FL457271
EST:     AGGAGGGGTGCTGAATTTTTGTCAGATGGGTGTGCAGTCTATAGATCAAC                         ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
genomic: AGGAGGGGTGCTGAATTTTTGTCAGATGGGTGTGCAGTCTATAGATCAACgtaagctgca ... tgtgatgcagATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
EST: gi|50329143|gb|CO524269.1|CO524269
EST:     AGGAGGGGTGCTGAATTTTTGTCAGATGGGTGTGCAGTCTATAGATCAAC                         ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
genomic: AGGAGGGGTGCTGAATTTTTGTCAGATGGGTGTGCAGTCTATAGATCAACgtaagctgca ... tgtgatgcagATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
EST: gi|14244729|gb|BG842667.2|BG842667
EST:     TTTTTGTCAGATGGGTGTGCAGTCTATAGATCAAC                         ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
genomic: TTTTTGTCAGATGGGTGTGCAGTCTATAGATCAACgtaagctgca ... tgtgatgcagATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
EST: gi|14208276|gb|BG841954.1|BG841954
EST:     ATGGGTGTGCAGTCTATAGAT-AAC                         ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
genomic: ATGGGTGTGCAGTCTATAGATCAACgtaagctgca ... tgtgatgcagATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
EST: gi|5919428|gb|AW054525.1|AW054525
EST:     GAATTTTTGTCAGATGGGTGTGCAGTCTATAGATCAAC                         ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
genomic: GAATTTTTGTCAGATGGGTGTGCAGTCTATAGATCAACgtaagctgca ... tgtgatgcagATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
EST: gi|78084875|gb|DV513268.1|DV513268
EST:     AGGAGGGGTGCTGAATTTTTGTCAGATGGGTGTGCAGTCTATAGATCAAC                         ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
genomic: AGGAGGGGTGCTGAATTTTTGTCAGATGGGTGTGCAGTCTATAGATCAACgtaagctgca ... tgtgatgcagATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
EST: gi|213191208|gb|FM187518.1|FM187518
EST:     AGGAGGGGTGCTGAATTTTTGTCAGATGGGTGTGCAGTCTATAGATCAAC                         ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
genomic: AGGAGGGGTGCTGAATTTTTGTCAGATGGGTGTGCAGTCTATAGATCAACgtaagctgca ... tgtgatgcagATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatggttttgtattgcaccagactgttttcctcactgaacaaattgtgatgcagATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG
                             tcctcac  putative branch site (score: 2)
      ttttgtatt  TA-rich tract