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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcagtgtatttgttctttgaatcaaagcgctataaaagagttcttttcaatttttttttaaatttttataccattttagcatctttatctcagGAAGAGTGCCAAAGGGTGTCGACGGAGGGACAGAACATGCGTATGGAATTGTCTGAAAAATTTGATATCGCCATAAAG

Basic information

species Zea mays
transcript GRMZM2G015730_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015730_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g17930.1 (Oryza sativa), 3'ss of exon 4
gtatgttcagtgtatttgttctttgaatcaaagcgctataaaagagttcttttcaatttttttttaaatttttataccattttagcatctttatctcagGAAGAGTGCCAAAGGGTGTCGACGGAGGGACAGAACATGCGTATGGAATTGTCTGAAAAATTTGATATCGCCATAAAG
           ||||        || ||| |      |       |||  |||  | |||| || ||  | | ||| | ||||||| |   |  ||||||||||||||| ||||||||| || ||||| ||||| ||||| ||||| || || || |||||  |||  || ||||||
-----------gtatggaacaagtgtatcgagttttgaagtgtctgtttattttcacttttgttcaa-ctataatatc-ttttagcgttgatgactcagGAAGAGTGCCGAAGGGTGTCAACAGAGGGGCAGAATATGCGGATGGAGTTATCCGACAAATTCAATAATGCTATAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40337560|gb|CK371630.1|CK371630
EST:     AACTAGAATCTCTTTGTAGGGAGTTTCAGCGTCAAAACAAAATGCTAAAG                         GAAGAGTGCCAAAGGGTGTCGACGGAGGGACAGAACATGCGTATGGAATTG
genomic: AACTAGAATCTCTTTGTAGGGAGTTTCAGCGTCAAAACAAAATGCTAAAGgtatgttcag ... tttatctcagGAAGAGTGCCAAAGGGTGTCGACGGAGGGACAGAACATGCGTATGGAATTG
EST: gi|31354045|gb|CD438402.1|CD438402
EST:     AACTAGAATCTCTTTGTAGGGAGTTTCAGCGTCCTCCCAAAATGCTAAAG                         GAAGAGTGCCAAAGGGTGTCGACGGAGGGACAGAACATGCGTATGGAATTG
genomic: AACTAGAATCTCTTTGTAGGGAGTTTCAGCGTCAAAACAAAATGCTAAAGgtatgttcag ... tttatctcagGAAGAGTGCCAAAGGGTGTCGACGGAGGGACAGAACATGCGTATGGAATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttcttttcaatttttttttaaatttttataccattttagcatctttatctcagGAAGAGTGCCAAAGGGTGTCGACGGAGGGACAGAACATGCGTATGGAATTGTCTGAAAAATTTGATATCGCCATAAAG
                                           tctttatctc  CT-rich tract
     ttttcaattttttttt  TA-rich tract