1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttcttttaaacatttcttcagaaatcagatggttattgacttattgagtcataaattgttcctgtgacgtatactggaattaagacttacagcaagttatgtggtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAGTGGGAGAATTTTGTCACAAGAAATCCTTCCTTGATGAAGATAATGACTC
species | Zea mays |
transcript | GRMZM2G015324_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAGEST: gi|9953024|gb|BE639607.1|BE639607
genomic: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAGEST: gi|71324358|gb|DR798880.1|DR798880
genomic: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAGEST: gi|211310556|gb|FL467517.1|FL467517
genomic: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: ATCATTGAGACAATCCTGGATAAG ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAGEST: gi|18174492|gb|BM349880.1|BM349880
genomic: ATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAGEST: gi|113703680|gb|EE681184.1|EE681184
genomic: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAGEST: gi|12968888|gb|BG265729.1|BG265729
genomic: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAGEST: gi|78116066|gb|DV534454.1|DV534454
genomic: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAGEST: gi|6102042|gb|AW126512.1|AW126512
genomic: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAGEST: gi|67024253|gb|CO453002.1|CO453002
genomic: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAGEST: gi|87155086|gb|DY399875.1|DY399875
genomic: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAGEST: gi|17931916|gb|BM268876.1|BM268876
genomic: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAGEST: gi|6227264|gb|AW155863.1|AW155863
genomic: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: TGAGACAATCCTGGATAAG ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAGEST: gi|28985958|gb|CB350899.1|CB350899
genomic: TGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAGEST: gi|211383652|gb|FL455014.1|FL455014
genomic: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
EST: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAG ACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
genomic: AATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGgttcttttaa ... gtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAG
ttcctgtgacgtatactggaattaagacttacagcaagttatgtggtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAGTGGGAGAATTTTGTCACAAGAAATCCTTCCTTGATGAAGATAATGACTC
gacttac putative branch site (score: 2)
aattaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttttaaacatttcttcagaaatcagatggttattgacttattgagtcataaattgttcctgtgacgtatactggaattaagacttacagcaagttatgtggtgatgacagACATTCTCTGATGCTGATGCAAATCAGGATGGGAAAATAGATAGAACAGAGTGGGAGAATTTTGTCACAAGAAATCCTTCCTTGATGAAGATAATGACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA