Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctcagaacttcaaccagagtctttcacctgctttaactttgttatgacactttgccatgcctttaactttgattgatgaaaaatgctggattcttgtagGTTATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACCAGGCAAGTGTTCTTTGCTAATAAATACTACACTTGTGTTACTTGTACAT

Basic information

species Zea mays
transcript GRMZM2G013625_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013625_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g47262.2 (Oryza sativa), 3'ss of exon 7
tctcagaacttcaaccagagtc--tttcacctgctttaactttgttatgacactttgccatgcctttaactttgattgatgaaaaatgctggattcttgtagGTTATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACCAGGCAAGTGTTCTTTGCTAATAAATACTACACTTGTGTTACTTGTACAT
| | |       | |    | |   || | | |    || |||  |      ||||||||| ||| ||| | || | ||   ||| |||||||||  |  ||||||||||||||||||| ||||| |||||| | || ||||| ||||| || ||                                               
tattaatctactagctcaggacgactttatcagaaagaaattt--tggtttgctttgccattcctctaattctggtagacataaagtgctggatttcttcagGTTATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAG-----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78115431|gb|DV533819.1|DV533819
EST:     AAACATGCTTTCTATCATCGATCGACTTGCATACTCAATACTCTTACCAG                         GTTATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACC
genomic: AAACATGCTTTCTATCATCGATCGACTTGCATACTCAATACTCTTACCAGgtaattaaag ... attcttgtagGTTATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACC
EST: gi|91053085|gb|EB163503.1|EB163503
EST:     AAACATGCTTTCTATCATCGATCGACTTGCATACTCAATACTCTTACCAG                         GTTATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACC
genomic: AAACATGCTTTCTATCATCGATCGACTTGCATACTCAATACTCTTACCAGgtaattaaag ... attcttgtagGTTATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACC
EST: gi|71767635|gb|DR965572.1|DR965572
EST:     AAACATGCTTTCTATCATCGATCGACTTGCATACTCAATACTCTTACCAG                         GTTATGTTACCAGAGGCTGTTGTCA-TTGTGGTCGCACCCACAGATCCAAC
genomic: AAACATGCTTTCTATCATCGATCGACTTGCATACTCAATACTCTTACCAGgtaattaaag ... attcttgtagGTTATGTTACCAGAGGCTGTTG-CAATTGTGGTCGCACCCACAGATCCAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgacactttgccatgcctttaactttgattgatgaaaaatgctggattcttgtagGTTATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACCAGGCAAGTGTTCTTTGCTAATAAATACTACACTTGTGTTACTTGTACAT
                                              ttcttgt  CT-rich tract
                 tttaacttt  TA-rich tract