1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tctctagcagtctaacctgccctaattttcttggggttttgttattgttgccattgatattctagtttcactgctaactacaattttttgtcttatccagGATGTAAAATATTATAACAAGTTAGAAGATCCAGCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAAC
species | Zea mays |
transcript | GRMZM2G013607_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAGCATGTGAGGGCTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATG GATGTAAAATATTATAACAAGTTAGAAGATCCAGCAGATGAAGAAAACGATEST: gi|60340656|gb|DN207629.1|DN207629
genomic: GAGCATGTGAGGGCTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATGgtatgatcgt ... tcttatccagGATGTAAAATATTATAACAAGTTAGAAGATCCAGCAGATGAAGAAAACGAT
EST: GAGCATGTGAGGGCTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATG GATGTAAAATATTATAACAAGTTAGAAGATCCAGCAGATGAAGAAAACGATEST: gi|213170721|gb|FM187986.1|FM187986
genomic: GAGCATGTGAGGGCTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATGgtatgatcgt ... tcttatccagGATGTAAAATATTATAACAAGTTAGAAGATCCAGCAGATGAAGAAAACGAT
EST: GTGAGGGCTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATG GATGTAAAATATTATAACAAGTTAGAAGATCCAGCAGATGAAGAAAACGATEST: gi|76294067|gb|DV033635.1|DV033635
genomic: GTGAGGGCTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATGgtatgatcgt ... tcttatccagGATGTAAAATATTATAACAAGTTAGAAGATCCAGCAGATGAAGAAAACGAT
EST: GAGCATGTGAGGGCTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATG GATGTAAAATATTATAACAAGTTAGAAGATCCAGCAGATGAAGAAAACGATEST: gi|76018911|gb|DT946081.1|DT946081
genomic: GAGCATGTGAGGGCTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATGgtatgatcgt ... tcttatccagGATGTAAAATATTATAACAAGTTAGAAGATCCAGCAGATGAAGAAAACGAT
EST: GAGCATGTGAGGGCTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATG GATGTAAAATATTATAACAAGTTAGAAGATCCAGCAGATGAAGAAAACGAT
genomic: GAGCATGTGAGGGCTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATGgtatgatcgt ... tcttatccagGATGTAAAATATTATAACAAGTTAGAAGATCCAGCAGATGAAGAAAACGAT
tgttgccattgatattctagtttcactgctaactacaattttttgtcttatccagGATGTAAAATATTATAACAAGTTAGAAGATCCAGCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAAC
tgctaac putative branch site (score: 1)
ttttttgtcttatcc putative PPT
taactacaatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctctagcagtctaacctgccctaattttcttggggttttgttattgttgccattgatattctagtttcactgctaactacaattttttgtcttatccagGATGTAAAATATTATAACAAGTTAGAAGATCCAGCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA