1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgggcacggttgaccgccgaagtagctacttcgaaaattgcaagcgttagtcatttcgacttcaatggatgattttgtttgagaatttatttaattgttctacaaattttcagGATTGTGAGAGACGATCAATAGCGAAGCTATTCCATCACCGGACAGAAGAGAGACACAACAGTGCACAATTAACAAGATGACACATCCTTCCTAGTGATG
species | Zea mays |
transcript | GRMZM2G011404_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACTGAGAAGGACAAATCCTGACAGACCATTCCGTCTCAATATGTTTAAG GATTGTGATAGACGATCAATAGCGAAGCTATTCCATCACCGGACAGAAGAGEST: gi|87154167|gb|DY398956.1|DY398956
genomic: AACTGAGAAGGACAAATCCTGACAGACCATTCCGTCTCAATATGTTTAAGgtgggcacgg ... aaattttcagGATTGTGAGAGACGATCAATAGCGAAGCTATTCCATCACCGGACAGAAGAG
EST: AACTGAGAAGGACAAATCCTGACAGACCATTCCGTCTCAATATGTTTAAG GATTGTGAGAGACGATCAATAGCGAAGCTATTCCATCACCGGACAGAAGAGEST: gi|7119098|gb|AW497478.1|AW497478
genomic: AACTGAGAAGGACAAATCCTGACAGACCATTCCGTCTCAATATGTTTAAGgtgggcacgg ... aaattttcagGATTGTGAGAGACGATCAATAGCGAAGCTATTCCATCACCGGACAGAAGAG
EST: AACTGAGAAGGACAAATCCTGACAGACCATTCCGTCTCAATATGTTTAAG GATTGTGAGAGACGATCAATAGCGAAGCTATTCCATCACCGGACAGAAGAGEST: gi|211160450|gb|FL446939.1|FL446939
genomic: AACTGAGAAGGACAAATCCTGACAGACCATTCCGTCTCAATATGTTTAAGgtgggcacgg ... aaattttcagGATTGTGAGAGACGATCAATAGCGAAGCTATTCCATCACCGGACAGAAGAG
EST: AACTGAGAAGGACAAATCCTGACAGACCATTCCGTCTCAATATGTTTAAG GATTGTGAGAGACGATCAATAGCGAAGCTATTCCATCACCGGACAGAAGAGEST: gi|40334682|gb|CK368752.1|CK368752
genomic: AACTGAGAAGGACAAATCCTGACAGACCATTCCGTCTCAATATGTTTAAGgtgggcacgg ... aaattttcagGATTGTGAGAGACGATCAATAGCGAAGCTATTCCATCACCGGACAGAAGAG
EST: AACTGAGAAGGACAAATCCTGACAGACCATTCCGTCTCAATATGTTTAAG GATTGTGATAGACGATCAATAGCGAAGCTATTCCATCACCGGACAGAAGAG
genomic: AACTGAGAAGGACAAATCCTGACAGACCATTCCGTCTCAATATGTTTAAGgtgggcacgg ... aaattttcagGATTGTGAGAGACGATCAATAGCGAAGCTATTCCATCACCGGACAGAAGAG
acttcaatggatgattttgtttgagaatttatttaattgttctacaaattttcagGATTGTGAGAGACGATCAATAGCGAAGCTATTCCATCACCGGACAGAAGAGAGACACAACAGTGCACAATTAACAAGATGACACATCCTTCCTAGTGATG
atttaat putative branch site (score: 12)
ttttc putative PPT
agaatttatttaattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggcacggttgaccgccgaagtagctacttcgaaaattgcaagcgttagtcatttcgacttcaatggatgattttgtttgagaatttatttaattgttctacaaattttcagGATTGTGAGAGACGATCAATAGCGAAGCTATTCCATCACCGGACAGAAGAGAGACACAACAGTGCACAATTAACAAGATGACACATCCTTCCTAGTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG