1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgttccatctgttaagacttcataaatgttccataacatagtacacaacattttcctttggtctgaacaatatagctgatcttcttttccttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGATTTACAAGGAAACCACCAAAGTATGAACGGTTCATTCGGCCAACTGGTCT
species | Zea mays |
transcript | GRMZM2G009876_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGATEST: gi|24764520|gb|CA399684.1|CA399684
genomic: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAAgtaagtgatg ... ttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGAT
EST: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGATEST: gi|101382315|gb|EB813213.1|EB813213
genomic: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAAgtaagtgatg ... ttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGAT
EST: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGATEST: gi|74232800|gb|DT640714.1|DT640714
genomic: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAAgtaagtgatg ... ttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGAT
EST: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGATEST: gi|6918424|gb|AW399954.1|AW399954
genomic: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAAgtaagtgatg ... ttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGAT
EST: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGGACTGGCAAGCGAAAAA CCAAGCAGNGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGATEST: gi|74232799|gb|DT640713.1|DT640713
genomic: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAAgtaagtgatg ... ttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGAT
EST: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGATEST: gi|67038385|gb|CO464715.1|CO464715
genomic: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAAgtaagtgatg ... ttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGAT
EST: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACTANAGCCACCTTTGTTGGAGCTGGATEST: gi|211358243|gb|FL402304.1|FL402304
genomic: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAAgtaagtgatg ... ttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGAT
EST: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGATEST: gi|148953095|gb|EE152575.2|EE152575
genomic: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAAgtaagtgatg ... ttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGAT
EST: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGATEST: gi|13515938|gb|BG518214.1|BG518214
genomic: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAAgtaagtgatg ... ttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGAT
EST: ATGTTCAGGGTTCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGATEST: gi|29946116|gb|CB815987.1|CB815987
genomic: ATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAAgtaagtgatg ... ttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGAT
EST: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGATEST: gi|31350057|gb|CD434414.1|CD434414
genomic: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAAgtaagtgatg ... ttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGAT
EST: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGATEST: gi|211251420|gb|FL479566.1|FL479566
genomic: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAAgtaagtgatg ... ttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGAT
EST: GTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAAACTGGCAAGCGAAAAA CCAAGCAGTGGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGAEST: gi|4621612|gb|AI612445.1|AI612445
genomic: GTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAA-CTGGCAAGCGAAAAAgtaagtgatg ... ttgtactcagCCAAGCAGTGG-AAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGA
EST: AAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGATEST: gi|60399997|gb|DN232804.1|DN232804
genomic: AAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAAgtaagtgatg ... ttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGAT
EST: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGATEST: gi|76015209|gb|DT942379.1|DT942379
genomic: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAAgtaagtgatg ... ttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGAT
EST: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAA CCAAACAGTGGAAGAGAATGGTTACTAAAGCCACCTTTEST: gi|60351247|gb|DN218220.1|DN218220
genomic: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAAgtaagtgatg ... ttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTT
EST: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGATEST: gi|88757436|gb|DY541577.1|DY541577
genomic: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAAgtaagtgatg ... ttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGAT
EST: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGATEST: gi|4776075|gb|AI665078.1|AI665078
genomic: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAAgtaagtgatg ... ttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGAT
EST: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACTAAAGCCCCCTTTGTTGGAGCTGGATEST: gi|149027253|gb|EE046450.2|EE046450
genomic: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAAgtaagtgatg ... ttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGAT
EST: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAA CCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGAT
genomic: TGTAGCTGAAGAAGAAATGTTCAAGGTTCTACGAACTGGCAAGCGAAAAAgtaagtgatg ... ttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGAT
caacattttcctttggtctgaacaatatagctgatcttcttttccttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGATTTACAAGGAAACCACCAAAGTATGAACGGTTCATTCGGCCAACTGGTCT
agctgat putative branch site (score: 58)
tcttcttttccttgta CT-rich tract
aacaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttccatctgttaagacttcataaatgttccataacatagtacacaacattttcctttggtctgaacaatatagctgatcttcttttccttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGATTTACAAGGAAACCACCAAAGTATGAACGGTTCATTCGGCCAACTGGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - ccatctg
- - - - - - - - - - - - - - - - - - - - - -cacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaata