1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...taattacaaatgctccttttcatatatgttgctctttgtatcattctgaagttttatgatgctagatgattgagatcataacacctgaacttttatttagGCATCCTTCAGCCTCTGTACTGATTCCAGCTCTGCGCACGGTGGGTAACATCGTAACTGGGGACGACATGCAGACTCAG
species | Zea mays |
transcript | GRMZM2G009845_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGTTATTGAATCTGGCGTGTTCCCTCGCCTTGTGGAACTTCTGAT GCATCCTTCACCCTCTGTACTGATTCCAGCTCTGCGCACGGTGGGTAACATEST: gi|71322679|gb|DR798011.1|DR798011
genomic: CTGTTATTGAATCTGGCGTGTTCCCTCGCCTTGTGGAACTTCTGATgtaagtgcat ... ttttatttagGCATCCTTCAGCCTCTGTACTGATTCCAGCTCTGCGCACGGTGGGTAACAT
EST: CAAGCTGTTATTGAATCTGGCGTGTTCCCTCGCCTTGTGGAACTTCTGAT GCATCCTTCAGCCTCTGTACTGATTCCAGCTCTGCGCACGGTGGGTAACATEST: gi|31350199|gb|CD434556.1|CD434556
genomic: CAAGCTGTTATTGAATCTGGCGTGTTCCCTCGCCTTGTGGAACTTCTGATgtaagtgcat ... ttttatttagGCATCCTTCAGCCTCTGTACTGATTCCAGCTCTGCGCACGGTGGGTAACAT
EST: CAAGCTGTTATTGAATCTGGCGTGTTCCCTCGCCTTGTGGAACTTCTGAT GCATCCTTCAGCCTCTGTACTGATTCCAGCTCTGCGCACGGTGGGTAACATEST: gi|32929275|gb|CF034087.1|CF034087
genomic: CAAGCTGTTATTGAATCTGGCGTGTTCCCTCGCCTTGTGGAACTTCTGATgtaagtgcat ... ttttatttagGCATCCTTCAGCCTCTGTACTGATTCCAGCTCTGCGCACGGTGGGTAACAT
EST: CAAGCTGTTATTGAATCTGGCGTGTTCCCTCGCCTTGTGGAACTTCTGAT GCATCCTTCAGCCTCTGTACTGATTCCAGCTCTGCGCACGGTGGGTAACATEST: gi|32928651|gb|CF033463.1|CF033463
genomic: CAAGCTGTTATTGAATCTGGCGTGTTCCCTCGCCTTGTGGAACTTCTGATgtaagtgcat ... ttttatttagGCATCCTTCAGCCTCTGTACTGATTCCAGCTCTGCGCACGGTGGGTAACAT
EST: CAAGCTGTTATTGAATCTGGCGTGTTCCCTCGCCTTGTGGAACTTCTGAT GCATCCTTCAGCCTCTGTACTGATTCCAGCTCTGCGCACGGTGGGTAACAT
genomic: CAAGCTGTTATTGAATCTGGCGTGTTCCCTCGCCTTGTGGAACTTCTGATgtaagtgcat ... ttttatttagGCATCCTTCAGCCTCTGTACTGATTCCAGCTCTGCGCACGGTGGGTAACAT
ctgaagttttatgatgctagatgattgagatcataacacctgaacttttatttagGCATCCTTCAGCCTCTGTACTGATTCCAGCTCTGCGCACGGTGGGTAACATCGTAACTGGGGACGACATGCAGACTCAG
tcataac putative branch site (score: 446)
cttttattt putative PPT
tgaacttttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taattacaaatgctccttttcatatatgttgctctttgtatcattctgaagttttatgatgctagatgattgagatcataacacctgaacttttatttagGCATCCTTCAGCCTCTGTACTGATTCCAGCTCTGCGCACGGTGGGTAACATCGTAACTGGGGACGACATGCAGACTCAG
- - - - - tgctcct
- - - - - - - - - ttcatat
- - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacctga