1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgggtgaagtgacctcatctgcttactacacatctcgcacactctttctttagactcggagtctgccccatcgacttacatctgatcagtgcttcaataattttcttggttgtgctcagCACTACACTCGGTCGCACCAGGAGGTCGCCCCACGGACGAGCTGGGAGATGTCAGAGCTGGGCTATGGAAAAGCGTCGGAGTCATAGCGTACGCTTACCA
species | Zea mays |
transcript | GRMZM2G008726_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATATAATTGTTTCAGCGCCAACTGCCCATGAGTTACTGAAGAAGATGGAG CACTACACTCGGTCGCACCAGGAGGTCGCCCCACGGACGAGCTGGGAGATGEST: gi|78114411|gb|DV532800.1|DV532800
genomic: ATATAATTGTTTCAGCGCCAACTGCCCATGAGTTACTGAAGAAGATGGAGgtgggtgaag ... ttgtgctcagCACTACACTCGGTCGCACCAGGAGGTCGCCCCACGGACGAGCTGGGAGATG
EST: ATATAATTGTTTCAGCGCCAACTGCCCATGAGTTACTGAAGAAGATGGAG CACTACACTCGGTCGCACCAGGAGGTCGCCCCACGGACGAGCTGGGAGATG
genomic: ATATAATTGTTTCAGCGCCAACTGCCCATGAGTTACTGAAGAAGATGGAGgtgggtgaag ... ttgtgctcagCACTACACTCGGTCGCACCAGGAGGTCGCCCCACGGACGAGCTGGGAGATG
gccccatcgacttacatctgatcagtgcttcaataattttcttggttgtgctcagCACTACACTCGGTCGCACCAGGAGGTCGCCCCACGGACGAGCTGGGAGATGTCAGAGCTGGGCTATGGAAAAGCGTCGGAGTCATAGCGTACGCTTACCA
ttcaataattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtgaagtgacctcatctgcttactacacatctcgcacactctttctttagactcggagtctgccccatcgacttacatctgatcagtgcttcaataattttcttggttgtgctcagCACTACACTCGGTCGCACCAGGAGGTCGCCCCACGGACGAGCTGGGAGATGTCAGAGCTGGGCTATGGAAAAGCGTCGGAGTCATAGCGTACGCTTACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT