1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gagcaacccaggataaactgttgcagttctaggtgtgaatgcactatgctttcactagaattaatagctaaaaatgtcttgcaatttgttgtccatgcagGCTAGTGGTGCTCGGATCAAGATATCAGATAGGGGTGACTATATATCTGGGACATCTGACAG
species | Zea mays |
transcript | GRMZM2G008410_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGGTGCTGTTGTAGGTCGAGCAGGAAGGAACATAACAGAGATCATTCAG GCTAGTGGTGCTCGGATCAAGATATCAGATAGGGGTGACTATATATCTGGGEST: gi|60394388|gb|DN227258.1|DN227258
genomic: TTGGTGCTGTTGTAGGTCGAGCAGGAAGGAACATAACAGAGATCATTCAGgtaactgtac ... gtccatgcagGCTAGTGGTGCTCGGATCAAGATATCAGATAGGGGTGACTATATATCTGGG
EST: TTGGTGCTGTTGTAGGTCGAGCAGGAAGGAACATAACAGAGATCATTCAG GCTAGTGGTGCTCGGATCAAGATATCAGATAGGGGTGACTATATATCTGGG
genomic: TTGGTGCTGTTGTAGGTCGAGCAGGAAGGAACATAACAGAGATCATTCAGgtaactgtac ... gtccatgcagGCTAGTGGTGCTCGGATCAAGATATCAGATAGGGGTGACTATATATCTGGG
atgctttcactagaattaatagctaaaaatgtcttgcaatttgttgtccatgcagGCTAGTGGTGCTCGGATCAAGATATCAGATAGGGGTGACTATATATCTGGGACATCTGACAG
agctaaa putative branch site (score: 636)
aattaatagctaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagcaacccaggataaactgttgcagttctaggtgtgaatgcactatgctttcactagaattaatagctaaaaatgtcttgcaatttgttgtccatgcagGCTAGTGGTGCTCGGATCAAGATATCAGATAGGGGTGACTATATATCTGGGACATCTGACAG
- - - - - - - - -ctgttgc
- - - - - - - - - - - - - - - - - -tgaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttgca