Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcaacagcataagcatttcgctgggcacatgtggcaagtgcattgtgtatcctcatccatagcttacaatctgtgtttgtcatatatatccgatgcctccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCTCT

Basic information

species Zea mays
transcript GRMZM2G008327_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G008327_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g02680.1 (Oryza sativa), 3'ss of exon 5
--gtaaggcaacagcataagcatttcgctgggcacatgtggcaagtgcattgtgtatcctcatccatagcttacaatctgtgtttgtcatatatatccgatgcctccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCTCT
   | |   ||||||||||  ||||   | |||   ||    || |||||    ||| ||   |||   || | | ||  ||  ||  ||             || |||  ||||| || |||||  | ||||| | ||||||||||||||| |||||||||||||||
gtatgacaaaacagcataaagattttattaggcgggtg----aactgcatc-catatactgtgcca---ctaatattccttgactgaaat-------------cttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT

upper sequence: GRMZM2G008327_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g02680.3 (Oryza sativa), 3'ss of exon 6
--gtaaggcaacagcataagcatttcgctgggcacatgtggcaagtgcattgtgtatcctcatccatagcttacaatctgtgtttgtcatatatatccgatgcctccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCTCT----------------------------------------------
   | |   ||||||||||  ||||   | |||   ||    || |||||    ||| ||   |||   || | | ||  ||  ||  ||             || |||  ||||| || |||||  | ||||| | ||||||||||||||| |||||||||||||||                                              
gtatgacaaaacagcataaagattttattaggcgggtg----aactgcatc-catatactgtgcca---ctaatattccttgactgaaat-------------cttcatcccagGATCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTGTAAGTCGAACACCACTCACCTTTGTTCATTAGCATGTCATAATAT

upper sequence: GRMZM2G008327_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g01850.2 (Oryza sativa), 3'ss of exon 6
--gtaaggcaacagcataagcatttcgctgggcacatgtggcaagtgcattgtgtatcctcatccatagcttacaatctgtgtttgtcatatatatccgatgcctccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCTCT
   | |   ||||||||||  ||||   | |||   ||    || |||||    ||| ||   |||   || | | ||  ||  ||  ||             || |||  ||||  || |||||  | ||||| | ||||||||||||||| |||||||||||||||
gtatgacaaaacagcataaagattttattaggcgggtg----aactgcatc-catatactgtgcca---ctgatattccttgactgaaat-------------cttcatcccagGCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78089349|gb|DV517723.1|DV517723
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|18174097|gb|BM349485.1|BM349485
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|60394106|gb|DN226976.1|DN226976
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|4609857|gb|AI600696.1|AI600696
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|76017100|gb|DT944270.1|DT944270
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|5525740|gb|AI861633.1|AI861633
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|211440494|gb|FL452489.1|FL452489
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|76017014|gb|DT944184.1|DT944184
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|211200718|gb|FL344211.1|FL344211
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCC
EST: gi|84969725|gb|DW468154.1|DW468154
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCGGGGTGGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|149096226|gb|EE181929.2|EE181929
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTGGGACCTTCTT
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|18171336|gb|BM341176.1|BM341176
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|50327703|gb|CO522829.1|CO522829
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGCCCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|18166325|gb|BM336164.1|BM336164
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|60394498|gb|DN227368.1|DN227368
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|31362736|gb|CD447093.1|CD447093
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACA
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACA
EST: gi|60345525|gb|DN212498.1|DN212498
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|60346409|gb|DN213382.1|DN213382
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|86470531|gb|DY236901.1|DY236901
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|148933262|gb|EC876914.2|EC876914
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTGGGACCTTCTT
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|211484592|gb|FL266361.1|FL266361
EST:     TCAGTTGTTTGCCTGACTTCAARACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|60397309|gb|DN230125.1|DN230125
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|4966783|gb|AI691639.1|AI691639
EST:     TCAGTTGTTTGCCTGACTTCAAGGCAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|50337361|gb|CO532487.1|CO532487
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|71768728|gb|DR966665.1|DR966665
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|60352073|gb|DN219046.1|DN219046
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|50323180|gb|CO518306.1|CO518306
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGCCCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|5739730|gb|AI947306.1|AI947306
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|7216216|gb|AW562338.1|AW562338
EST:     TTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|61118625|gb|DN559586.1|DN559586
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|17930906|gb|BM267866.1|BM267866
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|17930325|gb|BM267285.1|BM267285
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|6526696|gb|AW215985.1|AW215985
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|7204594|gb|AW559177.1|AW559177
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|83278334|gb|DV942342.1|DV942342
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
EST: gi|18163033|gb|BM332872.1|BM332872
EST:     TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG                         GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC
genomic: TCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 93

GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCTCT


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 39

GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCTCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 57

GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCTCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 43

GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAGgtaaggcaac ... tccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCTCT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatccatagcttacaatctgtgtttgtcatatatatccgatgcctccattacagGACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCTCT
        agcttac  putative branch site (score: 43)
                                           cctccatt  putative PPT
                       tttgtcatatatat  TA-rich tract