1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagctctatgttcctcagtaagtatgtgtacttttcctgtgtccgaacctgactaacctatcattcataatacctggacactgcagCTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAGAAGTACGGTATGAACGTCGTGGTGGCAAATGAACTCGCAAACTACAAAG
species | Zea mays |
transcript | GRMZM2G008209_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCATCCTCCGGAAAAACTGGGCTCCTGCTGCATTTTGTGTATCCTTCAAG CTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAGEST: gi|71758666|gb|DR956603.1|DR956603
genomic: TCATCCTCCGGAAAAACTGGGCTCCTGCTGCATTTTGTGTATCCTTCAAGgttagctcta ... gacactgcagCTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAG
EST: TCATCCTCCGGAAAAACTGGGCTCCTGCTGCATTTTGTGTATCCTTCAAG CTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAGEST: gi|71318838|gb|DR796180.1|DR796180
genomic: TCATCCTCCGGAAAAACTGGGCTCCTGCTGCATTTTGTGTATCCTTCAAGgttagctcta ... gacactgcagCTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAG
EST: TCATCCTCCGGAAAAACTGGGCTCCTGCTGCATTTTGTGTATCCTTCAAG CTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAGEST: gi|86469977|gb|DY236347.1|DY236347
genomic: TCATCCTCCGGAAAAACTGGGCTCCTGCTGCATTTTGTGTATCCTTCAAGgttagctcta ... gacactgcagCTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAG
EST: TCATCCTCCGGAAAAACTGGGCTCCTGCTGCATTTTGTGTATCCTTCAAG CTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAGEST: gi|18168718|gb|BM338558.1|BM338558
genomic: TCATCCTCCGGAAAAACTGGGCTCCTGCTGCATTTTGTGTATCCTTCAAGgttagctcta ... gacactgcagCTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAG
EST: TCATCCTCCGGAAAAACTGGGCTCCTGCTGCATTTTGTGTATCCTTCAAG CTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAGEST: gi|74246159|gb|DT654073.1|DT654073
genomic: TCATCCTCCGGAAAAACTGGGCTCCTGCTGCATTTTGTGTATCCTTCAAGgttagctcta ... gacactgcagCTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAG
EST: TCATCCTCCGGAAAAACTGGGCTCCTGCTGCATTTTGTGTATCCTTCAAG CTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAGEST: gi|71307842|gb|DR790142.1|DR790142
genomic: TCATCCTCCGGAAAAACTGGGCTCCTGCTGCATTTTGTGTATCCTTCAAGgttagctcta ... gacactgcagCTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAG
EST: TCATCCTCCGGAAAAACTGGGCTCCTGCTGCATTTTGTGTATCCTTCAAG CTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAGEST: gi|89249896|gb|DY621682.1|DY621682
genomic: TCATCCTCCGGAAAAACTGGGCTCCTGCTGCATTTTGTGTATCCTTCAAGgttagctcta ... gacactgcagCTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAG
EST: TCATCCTCCGGAAAAAATGGGCTCCTGCTGCATTTTGTGTATCCTTCAAG CTCGAAACAGATCCTAACATTTTCCTACAGAAGGCAGAGATGGCTTTGAAGEST: gi|71756861|gb|DR954798.1|DR954798
genomic: TCATCCTCCGGAAAAACTGGGCTCCTGCTGCATTTTGTGTATCCTTCAAGgttagctcta ... gacactgcagCTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAG
EST: TCATCCTCCGGAAAAACTGGGCTCCTGCTGCATTTTGTGTATCCTTCAAG CTCGAAACAGATCCTAACATTCTCCTCCAGAAGGCAGAGATGGCTTTGAAGEST: gi|74243665|gb|DT651579.1|DT651579
genomic: TCATCCTCCGGAAAAACTGGGCTCCTGCTGCATTTTGTGTATCCTTCAAGgttagctcta ... gacactgcagCTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAG
EST: TCATCCTCCGGAAAAACTGGGCTCCTGCTGCATTTTGTGTATCCTTCAAG CTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAGEST: gi|78120327|gb|DV538711.1|DV538711
genomic: TCATCCTCCGGAAAAACTGGGCTCCTGCTGCATTTTGTGTATCCTTCAAGgttagctcta ... gacactgcagCTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAG
EST: TCATCCTCCGGAAAAACTGGGCTCCTGCTGCATTTTGTGTATCCTTCAAG CTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAG
genomic: TCATCCTCCGGAAAAACTGGGCTCCTGCTGCATTTTGTGTATCCTTCAAGgttagctcta ... gacactgcagCTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAG
ttttcctgtgtccgaacctgactaacctatcattcataatacctggacactgcagCTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAGAAGTACGGTATGAACGTCGTGGTGGCAAATGAACTCGCAAACTACAAAG
gactaac putative branch site (score: 1)
tatcattcataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagctctatgttcctcagtaagtatgtgtacttttcctgtgtccgaacctgactaacctatcattcataatacctggacactgcagCTCGAAACAGATCCTAACATTCTCCTACAGAAGGCAGAGATGGCTTTGAAGAAGTACGGTATGAACGTCGTGGTGGCAAATGAACTCGCAAACTACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG