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gtgagtcttgctgtgttgaccttgaaaagcaagaagaaaagcaaagttttttctgtactgtttaatagagtccgttaacataccatatactaatgcccaaatcaatttatatgtttgtatcagTTGTACATATGGAACTACAATAAGAGAGATGGCACTTCTGTACCAGCCATCATACTAAAAACCCGCCGCTCGCTGAGAGCTGTTCATTTTCATCCGCGTG
species | Zea mays |
transcript | GRMZM2G007229_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGCATTTCATGGGAGTGGGGAGATTTTGGCAGTTGCATCAGGTCACAAA TTGTACATATGGAACTACAATAAGAGAGATGGCACTTCTGTACCAGCCATCEST: gi|78122102|gb|DV540486.1|DV540486
genomic: TTGCATTTCATGGAAGTGGGGAGATTTTGGCAGTTGCATCAGGTCACAAAgtgagtcttg ... tttgtatcagTTGTACATATGGAACTACAATAAGAGAGATGGCACTTCTGTACCAGCCATC
EST: TTGCATTTCATGGAAGTGGGGAGATTTTGGCAGTTGCATCAGGTCACAAA TTGTACATATGGGACTACAATAAGAGAGATGGCACTTCTGTATCAGTCATCEST: gi|93017682|gb|EB643202.1|EB643202
genomic: TTGCATTTCATGGAAGTGGGGAGATTTTGGCAGTTGCATCAGGTCACAAAgtgagtcttg ... tttgtatcagTTGTACATATGGAACTACAATAAGAGAGATGGCACTTCTGTACCAGCCATC
EST: TTGCATTTCATGGAAGTGGGGAGATTTTGGCAGTTGCATCAGGTCACAAA TTGTACATATGGAACTACAATAAGAGAGATGGCACTTCTGTACCAGCCATCEST: gi|78120030|gb|DV538414.1|DV538414
genomic: TTGCATTTCATGGAAGTGGGGAGATTTTGGCAGTTGCATCAGGTCACAAAgtgagtcttg ... tttgtatcagTTGTACATATGGAACTACAATAAGAGAGATGGCACTTCTGTACCAGCCATC
EST: TTGCATTTCATGGAAGTGGGGAGATTTTGGCAGTTGCATCAGGTCACAAA TTGTACATATGGAACTACAATAAGAGAGATGGCACTTCTGTACCAGCCATCEST: gi|31353753|gb|CD438110.1|CD438110
genomic: TTGCATTTCATGGAAGTGGGGAGATTTTGGCAGTTGCATCAGGTCACAAAgtgagtcttg ... tttgtatcagTTGTACATATGGAACTACAATAAGAGAGATGGCACTTCTGTACCAGCCATC
EST: TTGCATTTCATGGAAGTGGGGAGATTTTGGCAGTTGCATCAGGTCACAAA TTGTACATATGGAACTACAATAAGAGAGATGGCACTTCTGTACCAGCCATC
genomic: TTGCATTTCATGGAAGTGGGGAGATTTTGGCAGTTGCATCAGGTCACAAAgtgagtcttg ... tttgtatcagTTGTACATATGGAACTACAATAAGAGAGATGGCACTTCTGTACCAGCCATC
agtccgttaacataccatatactaatgcccaaatcaatttatatgtttgtatcagTTGTACATATGGAACTACAATAAGAGAGATGGCACTTCTGTACCAGCCATCATACTAAAAACCCGCCGCTCGCTGAGAGCTGTTCATTTTCATCCGCGTG
tactaat putative branch site (score: 62)
aaatcaatttatatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcttgctgtgttgaccttgaaaagcaagaagaaaagcaaagttttttctgtactgtttaatagagtccgttaacataccatatactaatgcccaaatcaatttatatgtttgtatcagTTGTACATATGGAACTACAATAAGAGAGATGGCACTTCTGTACCAGCCATCATACTAAAAACCCGCCGCTCGCTGAGAGCTGTTCATTTTCATCCGCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT