1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...cctttttcaaaacttctttattatatttggtgctatttgttgtttcttggttgttcactcctttagctgacttatattttgctccatcaaaatccaacagATAATGCAGCTCAGGCTAACCCCTCGGGTTTTGGTTGGTCACAGCTTTGGTGGAAAAG
species | Zea mays |
transcript | GRMZM2G007160_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGAGTGGACCACACACTGTTGCCTCAACTGCTCTTGATGTTCTAAAGCTG ATAATGCAGCTCAGGCTAACCCCTCGGGTTTTGGTTGGTCACAGCTTTGGT
genomic: AGAGTGGACCACACACTGTTGCCTCAACTGCTCTTGATGTTCTAAAGCTGgtttgtagct ... aatccaacagATAATGCAGCTCAGGCTAACCCCTCGGGTTTTGGTTGGTCACAGCTTTGGT
cttggttgttcactcctttagctgacttatattttgctccatcaaaatccaacagATAATGCAGCTCAGGCTAACCCCTCGGGTTTTGGTTGGTCACAGCTTTGGTGGAAAAG
agctgac putative branch site (score: 44)
acttatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctttttcaaaacttctttattatatttggtgctatttgttgtttcttggttgttcactcctttagctgacttatattttgctccatcaaaatccaacagATAATGCAGCTCAGGCTAACCCCTCGGGTTTTGGTTGGTCACAGCTTTGGTGGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - -tggtgct
- - - - - - - - - - - - - - - - - - -tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgct