1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tctgtagtgatatttctcttctctttcttatacagtcaatgttcctggataatatgatttgagcatttccattttattctaattctgatataatttctagTTCCTGAGGTGCAGGGAAGCTTGGCTTTCTGGAATTCTTGAAGATCTGGACCAAAGGAATGTTTATGATTACCTGAAAGGCATGGTGACTTGCCACAGGG
species | Zea mays |
transcript | GRMZM2G006781_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CACATCTGCGCCGAATTGGAGTTTTCAGCGAGTCAGAATTGCGCTTACAG -----G-G----A---A-GCTTGGCTTTCTGGAATTCTTGAAGATCTGGACEST: gi|71305530|gb|DR788908.1|DR788908
genomic: CACATCTGCGCCGAATTGGAGTTTTCAGCGAGTCAGAATTGCGCTTACAGgtattctgaa ... taatttctagTTCCTGAGGTGCAGGGAAGCTTGGCTTTCTGGAATTCTTGAAGATCTGGAC
EST: CACATCTGCGCCGAATTGGAGTTTTCAGCGAGTCAGAATTGCGCTTACAG TTCCTGAGGTGCAGGGAAGCTTGGCTTTCTGGAATTCTTEST: gi|148963434|gb|EE014450.2|EE014450
genomic: CACATCTGCGCCGAATTGGAGTTTTCAGCGAGTCAGAATTGCGCTTACAGgtattctgaa ... taatttctagTTCCTGAGGTGCAGGGAAGCTTGGCTTTCTGGAATTCTT
EST: CACATCTGCGCCGAATTGGAGTTTTCAGCGAGTCAGAATTGCGCTTACAG TTCCTGAGGTGCAGGGAAGCTTGGCTTTCTGGAATTCTTGAAGATCTGGACEST: gi|148999331|gb|EE036267.2|EE036267
genomic: CACATCTGCGCCGAATTGGAGTTTTCAGCGAGTCAGAATTGCGCTTACAGgtattctgaa ... taatttctagTTCCTGAGGTGCAGGGAAGCTTGGCTTTCTGGAATTCTTGAAGATCTGGAC
EST: CACATCTGCGCCGAATTGGAGTTTTCAGCGAGTCAGAATTGCGCTTACAG TTCCTGAGGTGCAGGGAAGCTTGGCTTTCTGGGATTCTTTGA-GATCTGGA
genomic: CACATCTGCGCCGAATTGGAGTTTTCAGCGAGTCAGAATTGCGCTTACAGgtattctgaa ... taatttctagTTCCTGAGGTGCAGGGAAGCTTGGCTTTCTGGAATTCTT-GAAGATCTGGA
tggataatatgatttgagcatttccattttattctaattctgatataatttctagTTCCTGAGGTGCAGGGAAGCTTGGCTTTCTGGAATTCTTGAAGATCTGGACCAAAGGAATGTTTATGATTACCTGAAAGGCATGGTGACTTGCCACAGGG
tttct CT-rich tract
attttattctaattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgtagtgatatttctcttctctttcttatacagtcaatgttcctggataatatgatttgagcatttccattttattctaattctgatataatttctagTTCCTGAGGTGCAGGGAAGCTTGGCTTTCTGGAATTCTTGAAGATCTGGACCAAAGGAATGTTTATGATTACCTGAAAGGCATGGTGACTTGCCACAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - gttcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgat