Sequence
atgc intronic sequence ATGC exonic sequencegtaactggcagactgccatcttacctgcttaaccttggtgcaccaaacttctgagctttgggactgatgtacactagatctgcatcgtgattaaacttgtagtcactttatttgaaatgagcatgcagtcctaccaatttcatgtatgtttcttttatagTTTTCAGACAAATTCACTATTATGCTGTTCCATTATGATGGTCGGACTACTGAGTGGGATGAATTTGAGTGGTCTAAAAGAGCAATCCATGTGAGTGTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G006507_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g19510.3 (Oryza sativa), 3'ss of exon 5
gtaactggcagactgccatcttac-ctgcttaaccttggtgcaccaaacttctgagctttgggactgatgtacactagatct-gcatcgtgattaaacttgtagtcactttat-ttgaaatgagcatgcagtc----ctaccaatttcatgtatgtttcttttatagTTTTCAGACAAATTCACTATTATGCTGTTCCATTATGATGGTCGGACTACTGAGTGGGATGAATTTGAGTGGTCTAAAAGAGCAATCCATGTGAGTGTCA
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gtaactg--agacggacatcttgcattgcttaaatttggtgcatcaatcaactataccctgtaacagataaacagttaatcttgcattccggt-gaactggtagtcactttttcttaatgtaaatatgcaattattgcttctgaattcatagaagcttttcatatagTTTTCAGATAAATTCACTATCATGCTATTCCATTATGATGGCCGGACTACTGAATGGGATGAATTTGAGTGGTCTAAAAGAGCTATCCATGTGAGTGTCA
upper sequence: GRMZM2G006507_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA12G29800.1 (Glycine max), 3'ss of exon 6
gtaactggcagactgccatcttacctgcttaaccttggtgcaccaaacttctgagctttgggactgatgtacactagatctgcatcgtgattaaacttgtagtcactttatttgaaatgagcatgcagtcctaccaatttcatgtatgtttcttttatagTTTTCAGACAAATTCACTATTATGCTGTTCCATTATGATGGTCGGACTACTGAGTGGGATGAATTTGAGTGGTCTAAAAGAGCAATCCATGTGAGTGTCA
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----------------------------------------------gttattgagattgactaccttcatatataagaatttatttgtatatctaccatttcttattttcttcaaaat-----tgctgac-tatcaaattg-----------ttctgtagTTTTCTGATGATTTTGCAATTTTGCTCTTTCATTATGATGGTCGGACTAGTGAATGGGATCAATTTGAGTGGTCAAGGAATGCAATCCATGTTAGTGCAA
upper sequence: GRMZM2G006507_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA13G39990.1 (Glycine max), 3'ss of exon 6
gtaactggcagactgccatcttacctgcttaaccttggtgcaccaaacttctgagctttgggactgatgtacactagatctgcat-cgtgattaaacttgtagtcactttatttgaaatgagcatgcagtcctaccaatttcatgtatgtttcttttatagTTTTCAGACAAATTCACTATTATGCTGTTCCATTATGATGGTCGGACTACTGAGTGGGATGAATTTGAGTGGTCTAAAAGAGCAATCCATGTGAGTGTCA
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-----------------------------------------------------------gttattgatattgactaccttcatatatatgaatttatttgtatatctaccatttcatattttc-ttcaagattgctgac----tatcaaattgttctgtagTTTTCTGATGATTTTGCAATTTTGCTCTTTCATTATGATGGTCGGACTAGTGAATGGGATCAATTTGAGTGGTCAAGGAGTGCAATCCATGTCAGCGCAA
upper sequence: GRMZM2G006507_T02 (Zea mays), 3'ss of exon 6
lower sequence: AT2G28310.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaactggcagactgccatcttacctgcttaaccttggtgcaccaaacttctgagctttgggactgatgtacactagatctgcatcgtgattaaacttgtagtcactt-tatttgaaatgagcatgcagtcctaccaatttcatgtatgtttcttttatagTTTTCAGACAAATTCACTATTATGCTGTTCCATTATGATGGTCGGACTACTGAGTGGGATGAATTTGAGTGGTCTAAAAGAGCAATCCATGTGAGTGTCA
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-----------------------------------------------------------------gttctgcaat--atcagcat-gtgttttagcaagtattgttttatatattctttgtggatacactcagattttttgttttcttgtcatatcttcagTTTTCTGAAGATTTCCAAATTTTGCTCTTCCATTATGATGGCCGGACAACTGAATGGGACCAATTTGAGTGGTCGAAGAGCGCGATTCATATTAGTACAA
upper sequence: GRMZM2G006507_T02 (Zea mays), 3'ss of exon 6
lower sequence: AT1G08040.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaactggcagactgccatcttacctgcttaaccttggtgcaccaaacttctgagctttgggactgatgtacactagatctgcatcgtgattaaacttgtagtcactttatttgaaatgagcatgcagtcctaccaatttcatgtatgtttcttttatagTTTTCAGACAAATTCACTATTATGCTGTTCCATTATGATGGTCGGACTACTGAGTGGGATGAATTTGAGTGGTCTAAAAGAGCAATCCATGTGAGTGTCA
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-----------------------------------------------------------------gttctgcaacaatttctcccc----tcttgtttgtaa--actatttgagtattgacacttaaagatttttgctttcatcatcattgcttc---agTTTTCTGAAGATTTCCAAATATTGTTATTCCATTATGATGGCCGAACAACTGAGTGGGACCAGTTTGAGTGGTCTAAAAATGCAATACATATCAGTGCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|87153082|gb|DY397871.1|DY397871EST: TTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCAGTCAAAAAG TTTTCAGACAAATTCACTATTATGCTGTTCCATTATGATGGTCGGACTACT
genomic: TTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCAGTCAAAAAGgtaactggca ... tcttttatagTTTTCAGACAAATTCACTATTATGCTGTTCCATTATGATGGTCGGACTACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttatttgaaatgagcatgcagtcctaccaatttcatgtatgtttcttttatagTTTTCAGACAAATTCACTATTATGCTGTTCCATTATGATGGTCGGACTACTGAGTGGGATGAATTTGAGTGGTCTAAAAGAGCAATCCATGTGAGTGTCA
tgtttctttt CT-rich tract
tatgtttcttttata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaactggcagactgccatcttacctgcttaaccttggtgcaccaaacttctgagctttgggactgatgtacactagatctgcatcgtgattaaacttgtagtcactttatttgaaatgagcatgcagtcctaccaatttcatgtatgtttcttttatagTTTTCAGACAAATTCACTATTATGCTGTTCCATTATGATGGTCGGACTACTGAGTGGGATGAATTTGAGTGGTCTAAAAGAGCAATCCATGTGAGTGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA