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gtaccaatctagttgactgatctgtaagaacaaactaatgcattttcagtgggtagaccattgacattaataaagtagaaacatccggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG
species | Zea mays |
transcript | GRMZM2G006468_T04 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|33100633|gb|CF060593.1|CF060593
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: ACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|14244855|gb|BG842793.2|BG842793
genomic: ACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTCCGGCCTTCAGATGCCEST: gi|14243138|gb|BG840841.2|BG840841
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|28984501|gb|BQ539125.2|BQ539125
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: CAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|71774337|gb|DR972215.1|DR972215
genomic: CAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACEST: gi|78113266|gb|DV531659.1|DV531659
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTAC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|5895762|gb|AW037008.1|AW037008
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|211186706|gb|FL252851.1|FL252851
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|13178078|gb|BG349336.1|BG349336
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|16925921|gb|BM078989.1|BM078989
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|13177698|gb|BG349129.1|BG349129
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: T-AGCAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|60399773|gb|DN232583.1|DN232583
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCEST: gi|60355084|gb|DN222057.1|DN222057
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|33102029|gb|CF061989.1|CF061989
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: ACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|60358728|gb|DN225701.1|DN225701
genomic: ACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|74242180|gb|DT650094.1|DT650094
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|76010926|gb|DT938096.1|DT938096
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|211505179|gb|FL436188.1|FL436188
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|60353604|gb|DN220577.1|DN220577
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: AAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|71774336|gb|DR972214.1|DR972214
genomic: AAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|76010925|gb|DT938095.1|DT938095
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|89755425|gb|DY685846.1|DY685846
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|33100890|gb|CF060850.1|CF060850
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: GTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAG--A-CATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|13178561|gb|BG349819.1|BG349819
genomic: GTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|60346391|gb|DN213364.1|DN213364
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTTTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
attttcagtgggtagaccattgacattaataaagtagaaacatccggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG
cattaat putative branch site (score: 3)
attaataaagtagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccaatctagttgactgatctgtaagaacaaactaatgcattttcagtgggtagaccattgacattaataaagtagaaacatccggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT