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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcttgaaatactggagatattatccaactgttctggttagcagtttagcactaaagcaagcagtatatctgtaatgacagtatattatttgcatttcagATGAAACTTGTGTTCTACTTCATGATGATCGTGGCCTCTTGACAACAGCAGATACTGGATTCAAACCTAGTGGCTCCCAGTTCTGCATTACTTTCAAGCC

Basic information

species Zea mays
transcript GRMZM2G006107_T02
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211315858|gb|FL198272.1|FL198272
EST:     GGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAG                         ATGAAACTTGTGTTCTACTTCATGATGATCGTGGCCTCTTGACAACAGCAG
genomic: GGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAGgtattaacca ... tgcatttcagATGAAACTTGTGTTCTACTTCATGATGATCGTGGCCTCTTGACAACAGCAG
EST: gi|94479119|gb|EB708077.1|EB708077
EST:     GGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAG                         ATGAAACTTGTGTTCTACTTCATGATGATCGTGGCCTCTTGACAACAGCAG
genomic: GGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAGgtattaacca ... tgcatttcagATGAAACTTGTGTTCTACTTCATGATGATCGTGGCCTCTTGACAACAGCAG
EST: gi|211075041|gb|FL431329.1|FL431329
EST:     GGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAG                         ATGAAACTTGTGTTCTACTTCATGATGATCGTGGCCTCTTGACAACAGCAG
genomic: GGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAGgtattaacca ... tgcatttcagATGAAACTTGTGTTCTACTTCATGATGATCGTGGCCTCTTGACAACAGCAG
EST: gi|211294918|gb|FL414861.1|FL414861
EST:     GGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAG                         ATGAAACTTGTGTTCTACTTCATGATGATCGTGGCCTCTTGACAACAGCAG
genomic: GGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAGgtattaacca ... tgcatttcagATGAAACTTGTGTTCTACTTCATGATGATCGTGGCCTCTTGACAACAGCAG
EST: gi|33467794|gb|CF244843.1|CF244843
EST:     GGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAG                         ATGAAACTTGTGTTCTACTTCATGATGATCGTGGCCTCTTGACAACAGCAG
genomic: GGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAGgtattaacca ... tgcatttcagATGAAACTTGTGTTCTACTTCATGATGATCGTGGCCTCTTGACAACAGCAG
EST: gi|211294917|gb|FL414860.1|FL414860
EST:     GGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAG                         ATGAAACTTGTGTTCTACTTCATGATGATCGTGGCCTCTTGACAACAGCAG
genomic: GGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAGgtattaacca ... tgcatttcagATGAAACTTGTGTTCTACTTCATGATGATCGTGGCCTCTTGACAACAGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagcactaaagcaagcagtatatctgtaatgacagtatattatttgcatttcagATGAAACTTGTGTTCTACTTCATGATGATCGTGGCCTCTTGACAACAGCAGATACTGGATTCAAACCTAGTGGCTCCCAGTTCTGCATTACTTTCAAGCC
    cactaaa  putative branch site (score: 2)
 tatattatttgcattt  TA-rich tract