1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...caccaatggcaatactctagaaagaagatttgtgacagtgcataagttgatttcagaacatgacaaaaacaatacatatttattccacgtctttttacagGTCAAGTATCTTGGAGAAGAAGGCGAGAATACTCCTATAGCGGGTGCAGTATCTATTTGTTCTCCATGGGATCTGTTG
species | Zea mays |
transcript | GRMZM2G005444_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGAAAACCACACTGTTTTGCATTGGTACAAGCATAGGTGCCAATATTGTG GTCAAGTATCTTGGAGAAGAAGGCGAGAATACTCCTATAGCGGGTGCAGTAEST: gi|76017556|gb|DT944726.1|DT944726
genomic: CGAAAACCACACTGTTTTGCATTGGTACAAGCATAGGTGCCAATATTGTGgtatgcatct ... ctttttacagGTCAAGTATCTTGGAGAAGAAGGCGAGAATACTCCTATAGCGGGTGCAGTA
EST: CGAAAACCACACTGTTTTGCATTGGTACAAGCATAGGTGCCAATATTGTG GTCAAGTATCTTGGAGAAGAAGGCGAGAATACTCCTATAGCGGGTGCAGTA
genomic: CGAAAACCACACTGTTTTGCATTGGTACAAGCATAGGTGCCAATATTGTGgtatgcatct ... ctttttacagGTCAAGTATCTTGGAGAAGAAGGCGAGAATACTCCTATAGCGGGTGCAGTA
gttgatttcagaacatgacaaaaacaatacatatttattccacgtctttttacagGTCAAGTATCTTGGAGAAGAAGGCGAGAATACTCCTATAGCGGGTGCAGTATCTATTTGTTCTCCATGGGATCTGTTG
agttgat putative branch site (score: 378)
ttccacgtcttttt putative PPT
acaaaaacaatacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caccaatggcaatactctagaaagaagatttgtgacagtgcataagttgatttcagaacatgacaaaaacaatacatatttattccacgtctttttacagGTCAAGTATCTTGGAGAAGAAGGCGAGAATACTCCTATAGCGGGTGCAGTATCTATTTGTTCTCCATGGGATCTGTTG
- - - - - - - - - -gaaagaag
- - - - - - - - - - - - - - - - - - -gtgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaca