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gtgagttgttggcattgcattattaatttattattcttgaggggttatgaatgatttacttcaattatgcttaaaattggattcattggaaacagAACACACACATCGCACTTGCTTTTGAGGTGCCAGGTGGTTGGAATCAAGAGAAAACTGCAATGGTTGTGACAGTGCTTCAG
species | Zea mays |
transcript | GRMZM2G005036_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAAATCTGTGTACGTGGGAGGAGACTATCGCTGCCAAGCAGATTCTCCA AACACACACATCGCACTTGCTTTTGAGGTGCCAGGTGGTTGGAATCAAGAGEST: gi|40333865|gb|CK367935.1|CK367935
genomic: CAAAATCTGTGTACGTGGGAGGAGACTATCGCTGCCAAGCAGATTCTCCAgtgagttgtt ... ttggaaacagAACACACACATCGCACTTGCTTTTGAGGTGCCAGGTGGTTGGAATCAAGAG
EST: CAAAATCTGTGTACGTGGGAGGAGACTATCGCTGCCAAGCAGATTCTCCA AACACACACATCGCACTTGCTTTTGAGGTGCCAGGTGGTTGGAATCAAGAGEST: gi|71438038|gb|DR819088.1|DR819088
genomic: CAAAATCTGTGTACGTGGGAGGAGACTATCGCTGCCAAGCAGATTCTCCAgtgagttgtt ... ttggaaacagAACACACACATCGCACTTGCTTTTGAGGTGCCAGGTGGTTGGAATCAAGAG
EST: CAAAATCTGTGTACGTGGGAGGAGACTATCGCTGCCAAGCAGATTCTCCA AACACACACATCGCACTTGCTTTTGAGGTGCCAGGTGGTTGGAATCAAGAGEST: gi|40336960|gb|CK371030.1|CK371030
genomic: CAAAATCTGTGTACGTGGGAGGAGACTATCGCTGCCAAGCAGATTCTCCAgtgagttgtt ... ttggaaacagAACACACACATCGCACTTGCTTTTGAGGTGCCAGGTGGTTGGAATCAAGAG
EST: GGAGACTATCGCTGCCAAGCAGATTCTCCA AACACACACATCGCACTTGCTTTTGAGGTGCCAGGTGGTTGGAATCAAGAGEST: gi|30031572|gb|CB833423.1|CB833423
genomic: GGAGACTATCGCTGCCAAGCAGATTCTCCAgtgagttgtt ... ttggaaacagAACACACACATCGCACTTGCTTTTGAGGTGCCAGGTGGTTGGAATCAAGAG
EST: CAAAATCTGTGTACGTGGGAGGAGACTATCGCTGCCAAGCAGATTCTCCA AACACACACATCGCACTTGCTTTTGAGGTGCCAGGTGGTTGGAATCAAGAGEST: gi|211246196|gb|FL443898.1|FL443898
genomic: CAAAATCTGTGTACGTGGGAGGAGACTATCGCTGCCAAGCAGATTCTCCAgtgagttgtt ... ttggaaacagAACACACACATCGCACTTGCTTTTGAGGTGCCAGGTGGTTGGAATCAAGAG
EST: CAAAATCTGTGTACGTGGGAGGAGACTATCGCTGCCAAGCAGATTCTCCA AACACACACATCGCACTTGCTTTTGAGATGCCAGGTGGTTGGAATCAAGAG
genomic: CAAAATCTGTGTACGTGGGAGGAGACTATCGCTGCCAAGCAGATTCTCCAgtgagttgtt ... ttggaaacagAACACACACATCGCACTTGCTTTTGAGGTGCCAGGTGGTTGGAATCAAGAG
ggggttatgaatgatttacttcaattatgcttaaaattggattcattggaaacagAACACACACATCGCACTTGCTTTTGAGGTGCCAGGTGGTTGGAATCAAGAGAAAACTGCAATGGTTGTGACAGTGCTTCAG
aattatgcttaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttgttggcattgcattattaatttattattcttgaggggttatgaatgatttacttcaattatgcttaaaattggattcattggaaacagAACACACACATCGCACTTGCTTTTGAGGTGCCAGGTGGTTGGAATCAAGAGAAAACTGCAATGGTTGTGACAGTGCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA