1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaaacatgattgcacctattgatataacacataactcttctgattggagaagttgactgatatactagagcgccttatccagGTGTATATCATTGGAGGAGATGGAACTCAGAAGGGAGCATATGAGATCTTCAAG
species | Zea mays |
transcript | GRMZM2G004932_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGATACCAAAAAGATTGTTGATAACATTCAAGATCGTGGAATCAACCAG GTGTATATCATTGGAGGAGATGGAACTCAGAAGGGAGCATATGAGATCTTCEST: gi|71433707|gb|DR814757.1|DR814757
genomic: ATGATACCAAAAAGATTGTTGATAACATTCAAGATCGTGGAATCAACCAGgtaaacatga ... ccttatccagGTGTATATCATTGGAGGAGATGGAACTCAGAAGGGAGCATATGAGATCTTC
EST: ATGATACCAAAAAGATTGTTGATAACATTCAAGATCGTGGAATCAACCAG GTGTATATCATTGGAGGAGATGGAACTCAGAAGGGAGCATATGAGATCTTC
genomic: ATGATACCAAAAAGATTGTTGATAACATTCAAGATCGTGGAATCAACCAGgtaaacatga ... ccttatccagGTGTATATCATTGGAGGAGATGGAACTCAGAAGGGAGCATATGAGATCTTC
cacataactcttctgattggagaagttgactgatatactagagcgccttatccagGTGTATATCATTGGAGGAGATGGAACTCAGAAGGGAGCATATGAGATCTTCAAG
gactgat putative branch site (score: 125)
ccttatcc putative PPT
atatacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacatgattgcacctattgatataacacataactcttctgattggagaagttgactgatatactagagcgccttatccagGTGTATATCATTGGAGGAGATGGAACTCAGAAGGGAGCATATGAGATCTTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC