1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacaatttatcaatgaaacctgatatccccccttcgaaatgtttttggcagacgacatacttacaataattcgtgtatatgttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACCTGTCTGCCCCTCAAACATTCAGGTCCAAGGAGATCTCCAAGAGCAACG
species | Zea mays |
transcript | GRMZM2G004528_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAG CCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACEST: gi|32856301|gb|CD995982.1|CD995982
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAAC
EST: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAG CCCACCTCGATTGTNNGAGCTACAACCACTTGGGAAACAACGACGGCATGAEST: gi|32855713|gb|CD995394.1|CD995394
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGT--GAGCTACAACCACTTGGGAAACAACGACGGCATGA
EST: CCTAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAG CCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACEST: gi|6637095|gb|AW261367.1|AW261367
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAAC
EST: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAG CCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACEST: gi|211037209|gb|FK948218.1|FK948218
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAAC
EST: CCAAGATGAAATCGGTCCTGGTTGATTTCCTTGTTGGTGCTGGAATAAAG CCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACEST: gi|91871596|gb|EB401553.1|EB401553
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAAC
EST: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAG CCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACEST: gi|13516068|gb|BG518344.1|BG518344
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAAC
EST: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAG CCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACEST: gi|6527007|gb|AW216231.1|AW216231
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAAC
EST: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGNTGGTGCTGGAATAAAG CCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACEST: gi|6637051|gb|AW261323.1|AW261323
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAAC
EST: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAG CCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACEST: gi|32831002|gb|CD970680.1|CD970680
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAAC
EST: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAG CCCACCTCGATTGTGAGCTACAACCACTTTCGCAAACAACGACGGCATGAAEST: gi|32803449|gb|CD955685.1|CD955685
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGG-AAACAACGACGGCATGAA
EST: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAG CCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGGCGGCATGAACEST: gi|32854168|gb|CD993849.1|CD993849
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAAC
EST: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAG CCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACEST: gi|211029038|gb|FL245284.1|FL245284
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAAC
EST: CCAAGATGAAATCGGTCCTGGTTGATTTCCTTGTTGGTGCTGGAATAAAG CCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACEST: gi|33098850|gb|CF058810.1|CF058810
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAAC
EST: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAG CCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACEST: gi|6564123|gb|AW231745.1|AW231745
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAAC
EST: CCAAGATGAAATCGGTCCTGGT-GATTTTCTTGTTGGTGCTGGAATAAAG CCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGEST: gi|32921535|gb|CF026347.1|CF026347
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGG
EST: CCAAGATGAAATCGGTCCTGGTTGATTTCCTTGTTGGTGCTGGAATAAAG CCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACEST: gi|31364344|gb|CD448699.1|CD448699
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAAC
EST: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAG CCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACEST: gi|32945128|gb|CF049947.1|CF049947
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAAC
EST: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAG CCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACEST: gi|32921566|gb|CF026378.1|CF026378
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAAC
EST: CCAAGATGAAATCGGTCCTGGTTGATTTCCTTGTTGGTGCTGGAATAAAG CCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACEST: gi|60346856|gb|DN213829.1|DN213829
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAAC
EST: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAG CCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACEST: gi|21621348|gb|BQ619354.1|BQ619354
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAAC
EST: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAG CCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACEST: gi|32920511|gb|CF025323.1|CF025323
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAAC
EST: CCAAGATGAAATCGGTCCTGGCTGATTTCCTTGTTGGTGCTGGAATAAAG CCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACEST: gi|67029746|gb|CO458495.1|CO458495
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAAC
EST: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAG CCCACCTCGATTGTGAGCTATAACCACTTGGGAAACAACGACGGCATGAAC
genomic: CCAAGATGAAATCGGTCCTGGTTGATTTTCTTGTTGGTGCTGGAATAAAGgtacaattta ... gttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAAC
gaaatgtttttggcagacgacatacttacaataattcgtgtatatgttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACCTGTCTGCCCCTCAAACATTCAGGTCCAAGGAGATCTCCAAGAGCAACG
tacttac putative branch site (score: 1)
atacttacaataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaatttatcaatgaaacctgatatccccccttcgaaatgtttttggcagacgacatacttacaataattcgtgtatatgttcatgcagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACCTGTCTGCCCCTCAAACATTCAGGTCCAAGGAGATCTCCAAGAGCAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA