1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ccctgtcagaataaatcagcgtgtcctcaggtctttattactatctgactatttgagccttggaacagaaggtttacatacgcaagctcttgtgatttagATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTTTACGGATGGGGATGGAACAAG
species | Zea mays |
transcript | GRMZM2G003565_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAG ATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTTEST: gi|211087172|gb|FL255715.1|FL255715
genomic: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAGgtaaatatac ... tgtgatttagATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTT
EST: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAG ATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTTEST: gi|194716840|gb|FK933999.1|FK933999
genomic: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAGgtaaatatac ... tgtgatttagATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTT
EST: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAG ATTTCAGGCGGCTGGAGGCACACGATGGCACTTACATCAGAGGGAGAGCTTEST: gi|211471127|gb|FL255671.1|FL255671
genomic: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAGgtaaatatac ... tgtgatttagATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTT
EST: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAG ATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTTEST: gi|211476174|gb|FL255694.1|FL255694
genomic: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAGgtaaatatac ... tgtgatttagATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTT
EST: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAG ATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTT
genomic: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAGgtaaatatac ... tgtgatttagATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTT
tgactatttgagccttggaacagaaggtttacatacgcaagctcttgtgatttagATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTTTACGGATGGGGATGGAACAAG
atctgac putative branch site (score: 901)
ctcttgt putative PPT
tttacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccctgtcagaataaatcagcgtgtcctcaggtctttattactatctgactatttgagccttggaacagaaggtttacatacgcaagctcttgtgatttagATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTTTACGGATGGGGATGGAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaagct