Sequence
atgc intronic sequence ATGC exonic sequencegtggattaaacaacccatcatcatcattcttcttccttgttagttatgatacccacgcttgcctttcatgaatcatgatcctatagatatttgatattaatcagttctggaaagttgaacaacatttgagcatgtcaaaacctgatcgttgcctgttccatgacaacagTGGAGAGCACAACTTGCCGGACAGCCCATTTGCGTCCCCTACCAAGTCTGCCGCGCTCGTGCACGACAGTTTCGCCGCCACGGAGCCTGAGAACACCGCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G003424_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g21160.1 (Oryza sativa), 3'ss of exon 6
gtggattaaacaacccatcatcatcattcttcttccttgttagttatgatacccacgcttgcctttcatgaatcatgatcctatagatatttgatattaatcagttctggaaagttgaacaacatttgagcatgtcaaaacctgatcgttgcctgttccatgacaacagTGGAGAGCACAACTTGCCGGACAGCCCATTTGCGTCCCCTACCAAGTCTGCCGCGCTCGTGCACGACAGTTTCGCCGCCACGGAGCCTGAGAACACCGCG---
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gtagatt---tttaccattattggcattctgcttgctcatga-ttctcagactaatgtcattaactcatgaacaacaagcctacaaat--ctgcaattattccgtggctgaaagtt------tgcttcaccat---------tgtttgt-gcatgtattttga--gcagTGGTGAGCACAACTTGCCAGACAGCCCGTTTGCTTCCTCTACCAAGTCGACCGCATTCTT-TACCGCAAC--CGCTGCCACTGCCATTGGTAGCGAGGGAGATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|87156061|gb|DY400850.1|DY400850EST: GAAGAATCTGCTTGCGAGGCGAGCCCTGACGCCGCTGATAGCGACCAAAG TGGAGATCACAACTTGCCGGACAGCCCATTTGCGTCCCCTACCAAGTCTGC
genomic: GAAGAATCTGCTTGCGAGGCGAGCCCTGACGCCGCTGATAGCGACCAAAGgtggattaaa ... atgacaacagTGGAGAGCACAACTTGCCGGACAGCCCATTTGCGTCCCCTACCAAGTCTGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgaacaacatttgagcatgtcaaaacctgatcgttgcctgttccatgacaacagTGGAGAGCACAACTTGCCGGACAGCCCATTTGCGTCCCCTACCAAGTCTGCCGCGCTCGTGCACGACAGTTTCGCCGCCACGGAGCCTGAGAACACCGCG
acctgat putative branch site (score: 4)
aacattt TA-rich tract